Variant report

Variant	rs2187455
Chromosome Location	chr9:18193796-18193797
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10810926	0.93[ASN][1000 genomes]
rs10810935	0.86[ASN][1000 genomes]
rs10963479	0.85[ASN][1000 genomes]
rs10963483	0.85[ASN][1000 genomes]
rs10963484	0.84[ASN][1000 genomes]
rs10963485	0.88[ASN][1000 genomes]
rs10963507	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10963511	0.91[ASN][1000 genomes]
rs10963512	0.88[ASN][1000 genomes]
rs10963513	0.91[ASN][1000 genomes]
rs10963515	0.89[ASN][1000 genomes]
rs10963516	0.90[ASN][1000 genomes]
rs10963517	0.94[ASN][1000 genomes]
rs10963518	0.94[ASN][1000 genomes]
rs10963519	0.94[ASN][1000 genomes]
rs10963522	0.93[ASN][1000 genomes]
rs10963530	0.90[ASN][1000 genomes]
rs10963532	0.92[ASN][1000 genomes]
rs11789984	0.95[ASN][1000 genomes]
rs12235364	0.88[ASN][1000 genomes]
rs12236807	0.93[ASN][1000 genomes]
rs13285216	0.95[ASN][1000 genomes]
rs13288009	0.87[ASN][1000 genomes]
rs13290157	0.93[ASN][1000 genomes]
rs13299050	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1360410	0.87[ASN][1000 genomes]
rs16936441	0.94[ASN][1000 genomes]
rs16936442	0.94[ASN][1000 genomes]
rs16936469	0.87[ASN][1000 genomes]
rs1944740	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1944761	0.96[ASN][1000 genomes]
rs1944764	0.96[ASN][1000 genomes]
rs1944768	0.95[ASN][1000 genomes]
rs2383064	0.84[ASN][1000 genomes]
rs34110348	0.92[ASN][1000 genomes]
rs34427821	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34826359	0.92[ASN][1000 genomes]
rs34889953	0.88[ASN][1000 genomes]
rs35512056	0.88[ASN][1000 genomes]
rs35583999	0.83[ASN][1000 genomes]
rs35631237	0.84[ASN][1000 genomes]
rs67294529	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7032289	0.95[ASN][1000 genomes]
rs714345	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7872643	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1034518	chr9:18166899-18214878	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv520180	chr9:18187403-18193796	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2187455	MXRA7	trans	lymphoblastoid	seeQTL
rs2187455	FREM1	cis	parietal	SCAN
rs2187455	PSIP1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18191600-18196800	Weak transcription	Aorta	Aorta
2	chr9:18193400-18194600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr9:18193400-18195000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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