Variant report

Variant	rs13285216
Chromosome Location	chr9:18213676-18213677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:17811052..17811931-chr9:18212974..18213863,4	MCF-7	breast:
2	chr9:17531412..17532247-chr9:18212958..18213842,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10810926	0.96[ASN][1000 genomes]
rs10810935	0.89[ASN][1000 genomes]
rs10963483	0.83[ASN][1000 genomes]
rs10963484	0.81[ASN][1000 genomes]
rs10963485	0.85[ASN][1000 genomes]
rs10963507	0.93[ASN][1000 genomes]
rs10963511	0.91[ASN][1000 genomes]
rs10963512	0.88[ASN][1000 genomes]
rs10963513	0.91[ASN][1000 genomes]
rs10963515	0.89[ASN][1000 genomes]
rs10963516	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10963517	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10963518	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10963519	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10963522	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10963530	0.95[ASN][1000 genomes]
rs10963532	0.95[ASN][1000 genomes]
rs11789984	0.92[ASN][1000 genomes]
rs12235364	0.89[ASN][1000 genomes]
rs12236807	0.96[ASN][1000 genomes]
rs13288009	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13290157	0.91[ASN][1000 genomes]
rs13299050	0.96[ASN][1000 genomes]
rs1360410	0.83[ASN][1000 genomes]
rs16936441	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16936442	0.95[ASN][1000 genomes]
rs16936469	0.90[ASN][1000 genomes]
rs1944740	0.92[ASN][1000 genomes]
rs1944761	0.95[ASN][1000 genomes]
rs1944764	0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1944768	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2187455	0.95[ASN][1000 genomes]
rs2383064	0.81[ASN][1000 genomes]
rs34110348	0.95[ASN][1000 genomes]
rs34427821	0.93[ASN][1000 genomes]
rs34826359	0.95[ASN][1000 genomes]
rs34889953	0.91[ASN][1000 genomes]
rs35512056	0.85[ASN][1000 genomes]
rs35631237	0.88[ASN][1000 genomes]
rs67294529	0.94[ASN][1000 genomes]
rs7032289	0.94[ASN][1000 genomes]
rs714345	0.95[ASN][1000 genomes]
rs7872643	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021605	chr9:18002205-18271109	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv892679	chr9:18044802-18226609	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv892680	chr9:18089614-18267185	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv892681	chr9:18127068-18250459	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv892682	chr9:18166112-18272700	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1034518	chr9:18166899-18214878	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv892683	chr9:18201083-18226609	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:18213400-18215600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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