Variant report

Variant	rs10967606
Chromosome Location	chr9:26929860-26929861
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26925546..26927989-chr9:26928581..26931029,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10283496	1.00[AFR][1000 genomes]
rs1048949	0.84[AFR][1000 genomes]
rs10967592	1.00[AFR][1000 genomes]
rs10967596	1.00[AFR][1000 genomes]
rs10967607	1.00[AFR][1000 genomes]
rs12336131	1.00[AFR][1000 genomes]
rs12336425	1.00[AFR][1000 genomes]
rs12337864	1.00[AFR][1000 genomes]
rs12338421	1.00[AFR][1000 genomes]
rs12341319	1.00[AFR][1000 genomes]
rs12341560	1.00[AFR][1000 genomes]
rs12343349	1.00[AFR][1000 genomes]
rs12343386	1.00[AFR][1000 genomes]
rs12345094	0.84[AFR][1000 genomes]
rs12346262	0.82[AFR][1000 genomes]
rs12348209	1.00[AFR][1000 genomes]
rs12348249	1.00[AFR][1000 genomes]
rs12351389	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
3	chr9:26900800-26930000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:26901200-26935800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:26902800-26936600	Weak transcription	Spleen	Spleen
6	chr9:26903000-26935200	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr9:26903200-26930000	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr9:26903200-26932600	Strong transcription	Dnd41	blood
9	chr9:26903200-26935200	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr9:26903800-26931600	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr9:26904600-26935200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:26905400-26938200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr9:26905800-26937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:26906200-26936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr9:26911600-26930000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr9:26911600-26930000	Strong transcription	Placenta	Placenta
17	chr9:26912000-26932600	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr9:26912800-26935000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr9:26913200-26932600	Strong transcription	Primary B cells from cord blood	blood
20	chr9:26914600-26930000	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr9:26914600-26935600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr9:26915200-26930400	Strong transcription	Rectal Mucosa Donor 29	rectum
23	chr9:26915400-26930000	Strong transcription	Adipose Nuclei	Adipose
24	chr9:26915400-26930000	Strong transcription	HSMM	muscle
25	chr9:26915400-26930600	Strong transcription	Primary B cells from peripheral blood	blood
26	chr9:26915400-26931200	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr9:26915400-26931200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:26915400-26932000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr9:26915600-26930000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
30	chr9:26915800-26930200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
31	chr9:26916000-26930000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr9:26916000-26930800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr9:26916800-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr9:26917200-26936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:26917200-26936600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr9:26920400-26937400	Weak transcription	Fetal Heart	heart
37	chr9:26921600-26934600	Weak transcription	Small Intestine	intestine
38	chr9:26925000-26930600	Weak transcription	Fetal Stomach	stomach
39	chr9:26925000-26936200	Weak transcription	Esophagus	oesophagus
40	chr9:26925000-26936400	Weak transcription	Gastric	stomach
41	chr9:26925000-26936600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr9:26925000-26936600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:26925000-26936600	Weak transcription	Lung	lung
44	chr9:26925800-26934000	Weak transcription	Stomach Mucosa	stomach
45	chr9:26925800-26936400	Weak transcription	Brain Hippocampus Middle	brain
46	chr9:26925800-26945200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr9:26926000-26936000	Weak transcription	Brain Cingulate Gyrus	brain
48	chr9:26926000-26936200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr9:26926000-26936200	Weak transcription	Ovary	ovary
50	chr9:26926000-26936200	Weak transcription	K562	blood

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