Variant report

Variant	rs12346262
Chromosome Location	chr9:26864528-26864529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:26863474..26865685-chr9:26944202..26946970,2	K562	blood:
2	chr9:26863201..26866107-chr9:26870458..26872508,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10217792	1.00[YRI][hapmap]
rs10283496	0.82[AFR][1000 genomes]
rs1048949	0.89[AFR][1000 genomes]
rs10967592	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10967593	1.00[YRI][hapmap]
rs10967596	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10967606	0.82[AFR][1000 genomes]
rs10967607	0.82[AFR][1000 genomes]
rs12336131	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12336425	0.82[AFR][1000 genomes]
rs12337864	0.82[AFR][1000 genomes]
rs12338421	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12341319	0.82[AFR][1000 genomes]
rs12341560	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs12341712	1.00[YRI][hapmap]
rs12343349	0.82[AFR][1000 genomes]
rs12343386	0.82[AFR][1000 genomes]
rs12345094	1.00[YRI][hapmap]
rs12346926	1.00[YRI][hapmap]
rs12348209	0.82[AFR][1000 genomes]
rs12348249	0.82[AFR][1000 genomes]
rs12351389	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026827	chr9:26693515-26904699	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26822200-26889400	Weak transcription	Psoas Muscle	Psoas
2	chr9:26830200-26865400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:26832200-26866800	Weak transcription	Gastric	stomach
4	chr9:26832200-26878400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:26834000-26882400	Weak transcription	HUVEC	blood vessel
6	chr9:26834200-26870600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr9:26834200-26878400	Weak transcription	Brain Angular Gyrus	brain
8	chr9:26834200-26878600	Weak transcription	Spleen	Spleen
9	chr9:26834200-26880200	Weak transcription	Lung	lung
10	chr9:26834200-26880200	Weak transcription	NHEK	skin
11	chr9:26834200-26882200	Weak transcription	HMEC	breast
12	chr9:26834200-26888200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr9:26834200-26891200	Weak transcription	NHDF-Ad	bronchial
14	chr9:26836400-26879600	Weak transcription	Esophagus	oesophagus
15	chr9:26836600-26891400	Weak transcription	Brain Substantia Nigra	brain
16	chr9:26838000-26878200	Weak transcription	Brain Germinal Matrix	brain
17	chr9:26838200-26879600	Weak transcription	Pancreas	Pancrea
18	chr9:26840600-26882400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr9:26840800-26865400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr9:26840800-26879800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr9:26841200-26879800	Weak transcription	Colonic Mucosa	Colon
22	chr9:26842600-26882200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:26842800-26879600	Weak transcription	Thymus	Thymus
24	chr9:26843200-26878400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:26846400-26870600	Weak transcription	Fetal Stomach	stomach
26	chr9:26846600-26881600	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr9:26847000-26883000	Weak transcription	K562	blood
28	chr9:26851400-26878600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr9:26851400-26888000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr9:26851800-26888600	Weak transcription	Fetal Heart	heart
31	chr9:26851800-26891600	Weak transcription	Stomach Mucosa	stomach
32	chr9:26852400-26888000	Weak transcription	NHLF	lung
33	chr9:26852800-26876000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr9:26853200-26878600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr9:26853600-26878200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
36	chr9:26853800-26870600	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr9:26853800-26878400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr9:26853800-26878400	Weak transcription	Aorta	Aorta
39	chr9:26855000-26882200	Weak transcription	Right Ventricle	heart
40	chr9:26855400-26880200	Weak transcription	HepG2	liver
41	chr9:26855800-26888200	Weak transcription	NH-A	brain
42	chr9:26856000-26878800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr9:26856000-26881600	Weak transcription	Brain Hippocampus Middle	brain
44	chr9:26856000-26882200	Weak transcription	Brain Anterior Caudate	brain
45	chr9:26856000-26882200	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:26856200-26865800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
47	chr9:26856200-26866200	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr9:26856200-26878400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:26856200-26881400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:26856400-26878600	Weak transcription	Skeletal Muscle Male	skeletal muscle

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