Variant report

Variant	rs12348249
Chromosome Location	chr9:26932867-26932868
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10283496	1.00[AFR][1000 genomes]
rs1048949	0.84[AFR][1000 genomes]
rs10967592	1.00[AFR][1000 genomes]
rs10967596	1.00[AFR][1000 genomes]
rs10967606	1.00[AFR][1000 genomes]
rs10967607	1.00[AFR][1000 genomes]
rs12336131	1.00[AFR][1000 genomes]
rs12336425	1.00[AFR][1000 genomes]
rs12337864	1.00[AFR][1000 genomes]
rs12338421	1.00[AFR][1000 genomes]
rs12341319	1.00[AFR][1000 genomes]
rs12341560	1.00[AFR][1000 genomes]
rs12343349	1.00[AFR][1000 genomes]
rs12343386	1.00[AFR][1000 genomes]
rs12345094	0.84[AFR][1000 genomes]
rs12346262	0.82[AFR][1000 genomes]
rs12348209	1.00[AFR][1000 genomes]
rs12351389	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv528614	chr9:26893662-27074233	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:26893400-26936400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:26893400-26936400	Weak transcription	Psoas Muscle	Psoas
3	chr9:26901200-26935800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr9:26902800-26936600	Weak transcription	Spleen	Spleen
5	chr9:26903000-26935200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr9:26903200-26935200	Strong transcription	Primary monocytes fromperipheralblood	blood
7	chr9:26904600-26935200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:26905400-26938200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr9:26905800-26937400	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr9:26906200-26936600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr9:26912800-26935000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr9:26914600-26935600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:26916800-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:26917200-26936400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:26917200-26936600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr9:26920400-26937400	Weak transcription	Fetal Heart	heart
17	chr9:26921600-26934600	Weak transcription	Small Intestine	intestine
18	chr9:26925000-26936200	Weak transcription	Esophagus	oesophagus
19	chr9:26925000-26936400	Weak transcription	Gastric	stomach
20	chr9:26925000-26936600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:26925000-26936600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:26925000-26936600	Weak transcription	Lung	lung
23	chr9:26925800-26934000	Weak transcription	Stomach Mucosa	stomach
24	chr9:26925800-26936400	Weak transcription	Brain Hippocampus Middle	brain
25	chr9:26925800-26945200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr9:26926000-26936000	Weak transcription	Brain Cingulate Gyrus	brain
27	chr9:26926000-26936200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:26926000-26936200	Weak transcription	Ovary	ovary
29	chr9:26926000-26936200	Weak transcription	K562	blood
30	chr9:26926000-26936400	Weak transcription	H9 Cell Line	embryonic stem cell
31	chr9:26926000-26936400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr9:26926000-26936400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr9:26926000-26936400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr9:26926000-26936600	Weak transcription	Aorta	Aorta
35	chr9:26926000-26936600	Weak transcription	Left Ventricle	heart
36	chr9:26926000-26936600	Weak transcription	Right Ventricle	heart
37	chr9:26926000-26937600	Weak transcription	Brain Germinal Matrix	brain
38	chr9:26926000-26945200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr9:26926000-26945200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr9:26926000-26945400	Weak transcription	HSMMtube	muscle
41	chr9:26926200-26936200	Weak transcription	Colon Smooth Muscle	Colon
42	chr9:26926600-26936000	Weak transcription	Brain Angular Gyrus	brain
43	chr9:26926600-26937400	Weak transcription	Fetal Lung	lung
44	chr9:26926600-26937800	Weak transcription	Brain Anterior Caudate	brain
45	chr9:26926600-26941600	Weak transcription	HepG2	liver
46	chr9:26926600-26944200	Weak transcription	NHEK	skin
47	chr9:26926600-26945600	Weak transcription	Fetal Kidney	kidney
48	chr9:26927400-26937800	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr9:26927400-26943800	Weak transcription	Pancreas	Pancrea
50	chr9:26927400-26945600	Weak transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links