Variant report

Variant	rs10977381
Chromosome Location	chr9:8941656-8941657
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1036277	0.92[CHB][hapmap]
rs10759024	0.96[ASN][1000 genomes]
rs10816008	0.81[CEU][hapmap]
rs10816010	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10816011	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10816012	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10977400	0.91[YRI][hapmap]
rs10977409	0.80[YRI][hapmap]
rs10977415	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10977417	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs10977418	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12339309	0.80[YRI][hapmap]
rs1368677	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1368678	1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1897678	0.88[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap]
rs2117103	1.00[CHB][hapmap];0.85[YRI][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2381933	0.92[CHB][hapmap];0.89[JPT][hapmap]
rs4740970	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs7047447	0.87[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap]
rs7848109	0.92[CHB][hapmap];0.90[YRI][hapmap];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9696786	0.92[CHB][hapmap];0.91[YRI][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv892242	chr9:8879472-8941668	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	esv2762789	chr9:8903357-9030039	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv613299	chr9:8903857-9032105	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1023691	chr9:8907952-9030627	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv539981	chr9:8907952-9030627	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv969748	chr9:8924798-8993842	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv892246	chr9:8926071-8993027	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1021214	chr9:8929663-9011443	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1015673	chr9:8929663-9016071	Enhancers Flanking Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv466125	chr9:8939940-8993618	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv466126	chr9:8939940-8993618	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
16	nsv613300	chr9:8939940-8993618	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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