Variant report

Variant	rs2117103
Chromosome Location	chr9:8965645-8965646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1036277	0.92[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.82[JPT][hapmap];0.84[MEX][hapmap]
rs10759021	0.80[MEX][hapmap]
rs10759024	0.86[ASN][1000 genomes]
rs10816010	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs10816011	1.00[CHB][hapmap]
rs10816012	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];0.83[MEX][hapmap]
rs10816023	0.91[ASW][hapmap];0.95[YRI][hapmap]
rs10977381	1.00[CHB][hapmap];0.85[YRI][hapmap]
rs10977400	0.81[YRI][hapmap]
rs10977407	0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs10977408	0.92[CEU][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10977409	0.91[ASW][hapmap];0.92[CEU][hapmap];0.83[TSI][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10977415	0.88[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs10977417	0.89[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs10977418	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs10977425	0.88[CEU][hapmap]
rs12338273	0.82[EUR][1000 genomes]
rs12339309	0.91[ASW][hapmap];0.95[YRI][hapmap]
rs12348349	0.92[CEU][hapmap]
rs1368677	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.80[TSI][hapmap]
rs1368678	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs1433551	0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1433552	0.92[CEU][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1897678	1.00[CHB][hapmap];0.90[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs2381933	0.92[CEU][hapmap];0.93[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.80[TSI][hapmap]
rs4740970	0.93[CHB][hapmap];0.90[JPT][hapmap]
rs7047447	0.85[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap]
rs7848109	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.88[MKK][hapmap];0.81[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9696786	0.93[CHB][hapmap];0.82[JPT][hapmap];0.84[YRI][hapmap];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2762789	chr9:8903357-9030039	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv613299	chr9:8903857-9032105	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1023691	chr9:8907952-9030627	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv539981	chr9:8907952-9030627	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv969748	chr9:8924798-8993842	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv892246	chr9:8926071-8993027	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1021214	chr9:8929663-9011443	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1015673	chr9:8929663-9016071	Enhancers Flanking Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv466125	chr9:8939940-8993618	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
14	nsv466126	chr9:8939940-8993618	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv613300	chr9:8939940-8993618	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
16	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:8961800-8966200	Weak transcription	Dnd41	blood

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