Variant report

Variant	rs10977417
Chromosome Location	chr9:8974353-8974354
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1036277	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10511516	0.81[YRI][hapmap]
rs10759021	0.81[JPT][hapmap]
rs10759024	0.88[ASN][1000 genomes]
rs10816010	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10816011	0.92[CHB][hapmap];0.86[JPT][hapmap]
rs10816012	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs10816027	0.81[YRI][hapmap]
rs10977381	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs10977393	0.81[JPT][hapmap]
rs10977396	0.81[JPT][hapmap]
rs10977407	0.84[EUR][1000 genomes]
rs10977408	0.83[CEU][hapmap]
rs10977409	0.82[CEU][hapmap]
rs10977415	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs10977418	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10977425	0.82[CEU][hapmap]
rs12236852	0.81[JPT][hapmap]
rs12348349	0.83[CEU][hapmap]
rs12553733	0.82[YRI][hapmap]
rs1368676	0.81[JPT][hapmap]
rs1368677	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1368678	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1433551	0.84[EUR][1000 genomes]
rs1433552	0.83[CEU][hapmap];0.84[EUR][1000 genomes]
rs1897678	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs2117103	0.89[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2381933	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4314697	0.81[JPT][hapmap]
rs4740970	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7047447	1.00[JPT][hapmap]
rs7848109	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9696786	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022796	chr9:8360729-9110046	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1025800	chr9:8712487-9030627	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv539980	chr9:8712487-9030627	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1015898	chr9:8753534-9011443	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	esv2762789	chr9:8903357-9030039	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv613299	chr9:8903857-9032105	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1023691	chr9:8907952-9030627	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv539981	chr9:8907952-9030627	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv969748	chr9:8924798-8993842	Enhancers Weak transcription Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv892246	chr9:8926071-8993027	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1021214	chr9:8929663-9011443	Weak transcription Enhancers Flanking Active TSS	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1015673	chr9:8929663-9016071	Enhancers Flanking Active TSS Weak transcription	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv466125	chr9:8939940-8993618	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
14	nsv466126	chr9:8939940-8993618	Weak transcription Enhancers Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv613300	chr9:8939940-8993618	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
16	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv471275	chr9:8965753-8993617	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
18	nsv613301	chr9:8971580-8993618	Enhancers	n/a	n/a	inside rSNPs	diseases
19	nsv1021769	chr9:8971666-8987013	Enhancers	n/a	n/a	inside rSNPs	diseases
20	nsv892247	chr9:8973980-9001207	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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