Variant report

Variant	rs10977588
Chromosome Location	chr9:9218157-9218158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10122609	0.85[JPT][hapmap]
rs10124758	0.85[JPT][hapmap]
rs10977589	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10977595	1.00[JPT][hapmap]
rs10977607	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10977613	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10977616	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10977621	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs12336488	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12336879	1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[ASN][1000 genomes]
rs13295674	1.00[JPT][hapmap];0.93[YRI][hapmap];0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13299658	0.94[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13440065	0.88[CEU][hapmap]
rs13440449	0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1373807	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2381971	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4304375	0.85[JPT][hapmap]
rs7038241	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9987419	0.88[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2761491	chr9:9139951-9222892	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv613303	chr9:9187539-9225463	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:9215200-9218800	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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