Variant report

Variant	rs10977616
Chromosome Location	chr9:9251152-9251153
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10122609	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs10124758	0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10977588	1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs10977589	1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10977595	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs10977607	0.90[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10977613	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10977621	0.85[JPT][hapmap]
rs10977656	1.00[CHD][hapmap]
rs10977751	1.00[CHD][hapmap]
rs10977755	1.00[CHD][hapmap]
rs10977759	1.00[CHD][hapmap]
rs12336488	0.83[ASW][hapmap];0.87[CEU][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.84[MKK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12336879	0.91[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12344759	1.00[CHD][hapmap]
rs12349700	1.00[CHD][hapmap]
rs13295674	0.87[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13299658	1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13440065	1.00[CHD][hapmap]
rs13440449	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1373807	1.00[CHD][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2381971	1.00[JPT][hapmap]
rs4304375	0.85[JPT][hapmap]
rs7038241	0.83[ASW][hapmap];0.87[CEU][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv831505	chr9:9072216-9277320	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
7	nsv892253	chr9:9249912-9287321	Enhancers	n/a	n/a	inside rSNPs	n/a
8	nsv1030899	chr9:9250314-9291197	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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