Variant report

Variant	rs12344759
Chromosome Location	chr9:9305088-9305089
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10122609	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap]
rs10124758	0.87[CEU][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10491613	1.00[CHD][hapmap]
rs10816088	1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10977616	1.00[CHD][hapmap]
rs10977656	1.00[ASW][hapmap];0.94[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10977751	1.00[CHD][hapmap]
rs10977755	1.00[CHD][hapmap]
rs10977759	1.00[CHD][hapmap]
rs10977768	1.00[CHD][hapmap]
rs10977777	1.00[CHD][hapmap]
rs10977804	1.00[CHD][hapmap]
rs12336384	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12349700	1.00[CHD][hapmap]
rs13299658	1.00[CHD][hapmap]
rs1332808	1.00[CHD][hapmap]
rs1332809	1.00[CHD][hapmap]
rs1332810	1.00[CHD][hapmap]
rs13440065	1.00[CHD][hapmap]
rs1373807	1.00[CHD][hapmap]
rs7853950	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7857812	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
5	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv613305	chr9:9263980-9310461	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
8	nsv892255	chr9:9264932-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv892256	chr9:9269284-9348102	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
10	nsv1025791	chr9:9294304-9626331	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv892257	chr9:9304839-9349679	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
12	nsv892258	chr9:9304839-9455711	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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