Variant report

Variant	rs10122609
Chromosome Location	chr9:9283557-9283558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10124758	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10491613	1.00[CHD][hapmap]
rs10816088	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10977588	0.85[JPT][hapmap]
rs10977589	0.85[JPT][hapmap]
rs10977613	0.82[JPT][hapmap]
rs10977616	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs10977621	1.00[JPT][hapmap];1.00[YRI][hapmap]
rs10977656	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.94[TSI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10977751	1.00[CHD][hapmap]
rs10977755	1.00[CHD][hapmap]
rs10977759	1.00[CHD][hapmap]
rs10977768	1.00[CHD][hapmap]
rs10977777	1.00[CHD][hapmap]
rs10977804	1.00[CHD][hapmap]
rs12336384	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12336488	0.85[JPT][hapmap]
rs12336879	0.82[JPT][hapmap]
rs12344759	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap]
rs12349700	1.00[CHD][hapmap]
rs13295674	0.85[JPT][hapmap]
rs13299658	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs1332808	1.00[CHD][hapmap]
rs1332809	1.00[CHD][hapmap]
rs1332810	1.00[CHD][hapmap]
rs13440065	1.00[CHD][hapmap]
rs13440449	0.85[JPT][hapmap]
rs1373807	1.00[CHD][hapmap];0.85[JPT][hapmap]
rs2381971	0.82[JPT][hapmap]
rs7038241	0.85[JPT][hapmap]
rs7853950	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7857812	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498066	chr9:8961722-9486652	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv892249	chr9:9026854-9377679	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv892252	chr9:9164473-9476425	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1027042	chr9:9208635-9300048	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv1021440	chr9:9231961-9329870	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
6	nsv892253	chr9:9249912-9287321	Enhancers	n/a	n/a	inside rSNPs	n/a
7	nsv1030899	chr9:9250314-9291197	Enhancers	n/a	n/a	inside rSNPs	n/a
8	nsv892254	chr9:9253587-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
9	nsv824847	chr9:9255377-9378016	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv613304	chr9:9263980-9295281	Enhancers	n/a	n/a	inside rSNPs	n/a
11	nsv613305	chr9:9263980-9310461	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
12	esv1805303	chr9:9264439-9287406	Enhancers	n/a	n/a	inside rSNPs	n/a
13	nsv466129	chr9:9264932-9297697	Enhancers	n/a	n/a	inside rSNPs	n/a
14	nsv892255	chr9:9264932-9348102	Enhancers Weak transcription Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
15	nsv892256	chr9:9269284-9348102	Weak transcription Enhancers Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
16	nsv969749	chr9:9283460-9291430	Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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