Variant report

Variant	rs10982576
Chromosome Location	chr9:117920248-117920249
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10817718	0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs10982557	0.86[CEU][hapmap];0.84[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10982572	0.86[CEU][hapmap];0.88[JPT][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10982598	0.94[ASN][1000 genomes]
rs11794627	0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs12376870	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12380363	0.85[ASN][1000 genomes]
rs1360290	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2001693	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4448357	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4587405	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4979499	0.88[CEU][hapmap]
rs4979506	0.86[CEU][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57814325	0.83[ASN][1000 genomes]
rs7025283	0.88[ASN][1000 genomes]
rs7029482	0.94[ASN][1000 genomes]
rs7029844	0.83[ASN][1000 genomes]
rs7850000	0.88[JPT][hapmap];0.88[ASN][1000 genomes]
rs7865971	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117916800-117920400	Enhancers	Rectal Smooth Muscle	rectum
2	chr9:117917800-117921200	Weak transcription	Fetal Muscle Leg	muscle
3	chr9:117917800-117921600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:117918600-117921800	Enhancers	Colon Smooth Muscle	Colon
5	chr9:117918800-117920400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:117918800-117920400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr9:117918800-117920400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr9:117918800-117920400	Enhancers	HSMM	muscle
9	chr9:117918800-117920600	Enhancers	HMEC	breast
10	chr9:117918800-117921600	Enhancers	NHLF	lung
11	chr9:117918800-117921800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:117918800-117922000	Enhancers	Placenta Amnion	Placenta Amnion
13	chr9:117919000-117921600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:117919200-117920400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr9:117919200-117920600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:117919400-117920400	Enhancers	Fetal Intestine Small	intestine
17	chr9:117919400-117920600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr9:117919400-117920600	Enhancers	Fetal Intestine Large	intestine
19	chr9:117919400-117921200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr9:117919800-117920400	Enhancers	NH-A	brain
21	chr9:117919800-117920600	Enhancers	A549	lung
22	chr9:117919800-117920600	Enhancers	NHEK	skin
23	chr9:117919800-117921600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr9:117919800-117921600	Enhancers	Muscle Satellite Cultured Cells	--
25	chr9:117919800-117921600	Enhancers	Osteobl	bone
26	chr9:117919800-117922000	Enhancers	NHDF-Ad	bronchial
27	chr9:117920000-117920400	Enhancers	HSMMtube	muscle
28	chr9:117920200-117920400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr9:117920200-117920400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr9:117920200-117920400	Enhancers	Fetal Heart	heart
31	chr9:117920200-117921200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr9:117920200-117921400	Weak transcription	Stomach Smooth Muscle	stomach
33	chr9:117920200-117923000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links