Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:117913591..117915684-chr9:117915904..117917813,2	K562	blood:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10817718	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10982557	0.84[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10982572	0.86[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10982576	0.88[JPT][hapmap];1.00[ASN][1000 genomes]
rs10982598	0.94[ASN][1000 genomes]
rs12376870	0.90[ASN][1000 genomes]
rs12380363	0.85[ASN][1000 genomes]
rs1335341	1.00[AFR][1000 genomes]
rs1335350	0.86[CHB][hapmap]
rs1360290	0.90[ASN][1000 genomes]
rs1414146	0.86[CHB][hapmap]
rs1970209	1.00[AFR][1000 genomes]
rs2001693	0.90[ASN][1000 genomes]
rs4448357	0.94[ASN][1000 genomes]
rs4587405	0.90[ASN][1000 genomes]
rs4979506	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs57814325	0.83[ASN][1000 genomes]
rs62580506	1.00[AFR][1000 genomes]
rs7025283	0.88[ASN][1000 genomes]
rs7029482	0.94[ASN][1000 genomes]
rs7029844	0.83[ASN][1000 genomes]
rs7040243	0.86[CHB][hapmap]
rs7850000	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7851185	0.86[CHB][hapmap]
rs7865971	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117910000-117918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr9:117910000-117918800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:117910400-117918800	Weak transcription	NHLF	lung
4	chr9:117911800-117917400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:117912000-117917200	Weak transcription	Colon Smooth Muscle	Colon
6	chr9:117912200-117917200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:117912800-117915600	Enhancers	Fetal Intestine Small	intestine
8	chr9:117913800-117918800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:117914400-117916800	Weak transcription	Rectal Smooth Muscle	rectum
10	chr9:117915200-117915600	Enhancers	Fetal Intestine Large	intestine

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