Variant report

Variant	rs10982598
Chromosome Location	chr9:117947124-117947125
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs1000109	0.82[EUR][1000 genomes]
rs1000110	0.82[EUR][1000 genomes]
rs1000111	0.82[EUR][1000 genomes]
rs10759756	0.82[EUR][1000 genomes]
rs10759757	0.82[EUR][1000 genomes]
rs10817714	0.82[EUR][1000 genomes]
rs10817715	0.82[EUR][1000 genomes]
rs10817716	0.82[EUR][1000 genomes]
rs10817718	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982550	0.82[EUR][1000 genomes]
rs10982557	0.88[ASN][1000 genomes]
rs10982572	0.96[ASN][1000 genomes]
rs10982576	0.94[ASN][1000 genomes]
rs1111784	0.82[EUR][1000 genomes]
rs11792657	0.82[EUR][1000 genomes]
rs11793679	0.82[EUR][1000 genomes]
rs11794627	0.94[ASN][1000 genomes]
rs12376870	0.84[ASN][1000 genomes]
rs12379019	0.82[EUR][1000 genomes]
rs12380363	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12554357	0.82[EUR][1000 genomes]
rs12554651	0.81[EUR][1000 genomes]
rs1335350	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1360290	0.88[ASN][1000 genomes]
rs1411458	0.82[EUR][1000 genomes]
rs1414146	0.83[ASN][1000 genomes]
rs16936516	0.82[EUR][1000 genomes]
rs2001693	0.88[ASN][1000 genomes]
rs2012566	0.82[EUR][1000 genomes]
rs2012775	0.82[EUR][1000 genomes]
rs2900594	0.82[EUR][1000 genomes]
rs4448357	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4587405	0.96[ASN][1000 genomes]
rs4978620	0.82[EUR][1000 genomes]
rs4979501	0.82[EUR][1000 genomes]
rs4979506	0.92[ASN][1000 genomes]
rs57814325	0.81[ASN][1000 genomes]
rs58134557	0.82[EUR][1000 genomes]
rs58160054	0.82[EUR][1000 genomes]
rs61508829	0.82[EUR][1000 genomes]
rs62577989	0.83[ASN][1000 genomes]
rs62580502	0.81[EUR][1000 genomes]
rs6478132	0.82[EUR][1000 genomes]
rs7021057	0.82[EUR][1000 genomes]
rs7024048	0.82[EUR][1000 genomes]
rs7025283	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7029482	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029844	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7035705	0.82[EUR][1000 genomes]
rs7039636	0.82[EUR][1000 genomes]
rs7039915	0.82[EUR][1000 genomes]
rs7040243	0.83[ASN][1000 genomes]
rs7040521	0.82[EUR][1000 genomes]
rs7849266	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7849460	0.82[EUR][1000 genomes]
rs7849467	0.80[EUR][1000 genomes]
rs7850000	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7850007	0.82[EUR][1000 genomes]
rs7851185	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7865971	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs884790	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893769	chr9:117936903-117985886	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117930000-117964400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:117944000-117947200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr9:117945600-117959400	Weak transcription	Fetal Kidney	kidney
4	chr9:117945800-117959600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:117947000-117947200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr9:117947000-117947200	Enhancers	Colon Smooth Muscle	Colon
7	chr9:117947000-117954200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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