Variant report

Variant	rs4979506
Chromosome Location	chr9:117912042-117912043
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1000109	0.82[CEU][hapmap]
rs10759756	0.83[CEU][hapmap]
rs10759757	0.82[CEU][hapmap]
rs10817716	0.82[CEU][hapmap]
rs10817718	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982557	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982572	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10982576	0.86[CEU][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10982598	0.92[ASN][1000 genomes]
rs1111784	0.82[CEU][hapmap]
rs11788578	0.90[CEU][hapmap]
rs11792657	0.82[CEU][hapmap]
rs11793679	0.82[CEU][hapmap]
rs11794627	0.86[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12376870	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12380363	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1335350	1.00[CHB][hapmap]
rs1360290	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1414146	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs16936516	0.82[CEU][hapmap]
rs2001693	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2012566	0.82[CEU][hapmap]
rs2012775	0.82[CEU][hapmap]
rs4448357	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4587405	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4979499	1.00[CEU][hapmap]
rs4979500	0.83[CEU][hapmap]
rs4979501	0.83[CEU][hapmap]
rs57814325	0.88[ASN][1000 genomes]
rs7025283	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7029482	0.92[ASN][1000 genomes]
rs7029844	0.88[ASN][1000 genomes]
rs7040243	0.80[CEU][hapmap];1.00[CHB][hapmap]
rs7040521	0.83[CEU][hapmap]
rs7849460	0.82[CEU][hapmap]
rs7849467	0.82[CEU][hapmap]
rs7850000	0.83[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7850007	0.83[CEU][hapmap]
rs7851185	1.00[CHB][hapmap]
rs7865971	0.83[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615250	chr9:117768021-118012841	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv916912	chr9:117770039-118014140	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv831697	chr9:117860416-118023927	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv6681	chr9:117893926-117938609	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:117908400-117912200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr9:117909800-117913200	Weak transcription	Aorta	Aorta
3	chr9:117910000-117913400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:117910000-117918800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:117910000-117918800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr9:117910400-117913600	Weak transcription	Rectal Smooth Muscle	rectum
7	chr9:117910400-117918800	Weak transcription	NHLF	lung
8	chr9:117911600-117912200	Enhancers	Fetal Lung	lung
9	chr9:117911800-117917400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:117912000-117917200	Weak transcription	Colon Smooth Muscle	Colon

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