Variant report

Variant	rs10984506
Chromosome Location	chr9:100716140-100716141
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100713649..100719134-chr9:100743191..100747576,7	MCF-7	breast:
2	chr9:100684836..100688272-chr9:100714444..100717597,4	K562	blood:
3	chr9:100706165..100709021-chr9:100715689..100718287,2	MCF-7	breast:
4	chr9:100701698..100704267-chr9:100715673..100717593,3	K562	blood:
5	chr9:100705105..100707859-chr9:100714354..100717557,3	K562	blood:
6	chr9:100684849..100687327-chr9:100715960..100717542,31	MCF-7	breast:
7	chr9:100713086..100729092-chr9:100738274..100752806,69	K562	blood:
8	chr9:100681885..100689095-chr9:100713866..100720156,11	MCF-7	breast:
9	chr9:100704268..100707932-chr9:100713154..100718710,6	K562	blood:
10	chr9:100683535..100689169-chr9:100714844..100718494,7	K562	blood:
11	chr9:100697884..100704099-chr9:100714128..100720073,9	K562	blood:
12	chr9:100679350..100681181-chr9:100715024..100716909,2	K562	blood:
13	chr9:100684440..100688898-chr9:100715006..100719142,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136929	Chromatin interaction
ENSG00000236896	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10760021	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10760022	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10984361	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10984373	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10984405	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10984466	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10984499	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12377604	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1475695	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1475696	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17431614	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17431934	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2120263	0.86[ASN][1000 genomes]
rs2282192	0.86[ASN][1000 genomes]
rs2417577	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3183927	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3183928	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758253	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3758254	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3780420	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3808894	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3824496	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4631576	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743145	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4743147	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55737216	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66990486	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7030887	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7030907	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs755109	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7861658	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7864655	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1048135	chr9:100666931-100717030	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100713600-100716800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr9:100713600-100716800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:100713600-100717200	Weak transcription	Thymus	Thymus
4	chr9:100713600-100724200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr9:100713800-100717000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:100713800-100718800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr9:100714800-100716600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr9:100715600-100716600	Enhancers	K562	blood

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