Variant report

Variant	rs55737216
Chromosome Location	chr9:100695901-100695902
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100684548..100686454-chr9:100694702..100696797,2	MCF-7	breast:
2	chr9:100678422..100708679-chr9:100734559..100755577,174	K562	blood:
3	chr9:100695365..100698357-chr9:100723425..100724999,2	K562	blood:
4	chr9:100675954..100709047-chr9:100737887..100755543,175	K562	blood:

Variant related genes	Relation type
ENSG00000136938	Chromatin interaction
ENSG00000236896	Chromatin interaction
ENSG00000136932	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10760021	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760022	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984361	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10984373	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10984405	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10984466	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10984499	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10984506	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12377604	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1475695	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1475696	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17431614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17431934	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2120263	0.92[ASN][1000 genomes]
rs2282192	0.92[ASN][1000 genomes]
rs2417577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3183927	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3183928	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3758253	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758254	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780420	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3808894	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3824496	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4631576	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743145	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4743147	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66990486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030887	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7030907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs755109	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7861658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7864655	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893611	chr9:100561055-100739888	Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
2	nsv1048135	chr9:100666931-100717030	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs55737216	C9orf156	cis	Esophagus Muscularis	GTEx

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100693400-100700400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
2	chr9:100693600-100696200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr9:100693800-100696200	Enhancers	Primary T cells from cord blood	blood
4	chr9:100693800-100696200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:100693800-100696800	Enhancers	Primary hematopoietic stem cells	blood
6	chr9:100693800-100696800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr9:100694400-100697600	Weak transcription	Dnd41	blood
8	chr9:100694400-100699200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr9:100694600-100696000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr9:100694600-100697000	Weak transcription	Thymus	Thymus
11	chr9:100694600-100700000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:100695000-100696000	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr9:100695200-100699600	Transcr. at gene 5' and 3'	K562	blood
14	chr9:100695400-100696000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr9:100695400-100696000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr9:100695400-100699000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:100695600-100696000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr9:100695600-100700000	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr9:100695800-100696200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:100695800-100696400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr9:100695800-100698800	Enhancers	Fetal Thymus	thymus

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