Variant report

Variant	rs10984930
Chromosome Location	chr9:100830129-100830130
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100828550..100830823-chr9:101539471..101541826,2	K562	blood:
2	chr9:100817707..100820641-chr9:100828866..100831359,4	MCF-7	breast:
3	chr9:100817143..100819122-chr9:100828846..100830754,2	MCF-7	breast:
4	chr9:100828471..100830288-chr9:100834435..100836026,2	MCF-7	breast:
5	chr9:100829515..100832291-chr9:100834643..100836675,3	K562	blood:
6	chr9:100829196..100831340-chr9:100834533..100836675,2	K562	blood:
7	chr9:100819269..100820857-chr9:100828451..100830322,2	K562	blood:

Variant related genes	Relation type
ENSG00000165138	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10984961	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10985045	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10985049	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10985050	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12554940	0.86[EUR][1000 genomes]
rs1323521	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17806613	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2181583	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2417728	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs734769	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:100820000-100836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:100820000-100836600	Weak transcription	Brain Angular Gyrus	brain
5	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
6	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
8	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
9	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
11	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
12	chr9:100820200-100843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:100821000-100836400	Weak transcription	Colon Smooth Muscle	Colon
14	chr9:100821200-100836400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:100821200-100836600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
17	chr9:100821600-100832400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr9:100822200-100832200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr9:100822200-100832400	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr9:100822400-100832200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr9:100822400-100836400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:100822400-100836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr9:100822800-100831200	Strong transcription	Fetal Stomach	stomach
24	chr9:100822800-100832200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:100822800-100832400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:100822800-100833200	Strong transcription	Fetal Intestine Small	intestine
27	chr9:100823000-100830800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:100823000-100832200	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr9:100823200-100830200	Strong transcription	Fetal Intestine Large	intestine
30	chr9:100823600-100836400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr9:100823800-100842000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr9:100824200-100830800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr9:100824600-100836600	Weak transcription	Psoas Muscle	Psoas
34	chr9:100824600-100840000	Weak transcription	Ovary	ovary
35	chr9:100824800-100836400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr9:100824800-100840000	Weak transcription	Right Ventricle	heart
37	chr9:100824800-100843200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr9:100825000-100836400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr9:100827200-100830800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:100827200-100831800	Weak transcription	NHEK	skin
41	chr9:100827200-100834000	Weak transcription	Thymus	Thymus
42	chr9:100827200-100841200	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr9:100827400-100830200	Strong transcription	NH-A	brain
44	chr9:100827400-100831000	Weak transcription	Fetal Lung	lung
45	chr9:100827400-100833200	Weak transcription	Small Intestine	intestine
46	chr9:100827400-100833400	Weak transcription	Esophagus	oesophagus
47	chr9:100827400-100833400	Weak transcription	Gastric	stomach
48	chr9:100827400-100833400	Weak transcription	Spleen	Spleen
49	chr9:100827400-100833800	Weak transcription	Rectal Smooth Muscle	rectum
50	chr9:100827400-100834000	Weak transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links