Variant report

Variant	rs2181583
Chromosome Location	chr9:100847109-100847110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100838525..100840109-chr9:100844644..100847387,2	MCF-7	breast:
2	chr9:100845133..100849564-chr9:100852067..100857931,7	K562	blood:
3	chr9:100836770..100838393-chr9:100846222..100848303,2	K562	blood:
4	chr9:100842650..100845592-chr9:100845952..100848847,2	MCF-7	breast:
5	chr9:100845870..100848174-chr9:100911791..100914448,2	K562	blood:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000106785	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10984930	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10984961	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985045	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985049	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985050	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12554940	0.85[EUR][1000 genomes]
rs1323521	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17806613	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2417728	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs734769	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
3	esv3422585	chr9:100846431-100849383	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
4	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
5	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
6	chr9:100838200-100852800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
7	chr9:100838600-100848400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr9:100838600-100852000	Strong transcription	GM12878-XiMat	blood
9	chr9:100839000-100848400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr9:100839000-100849600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr9:100839000-100849800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr9:100839200-100847400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:100839400-100847600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr9:100839400-100847800	Strong transcription	Fetal Muscle Trunk	muscle
15	chr9:100839400-100848600	Strong transcription	Fetal Stomach	stomach
16	chr9:100839400-100850400	Strong transcription	Dnd41	blood
17	chr9:100839400-100861800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr9:100839600-100849400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr9:100839600-100850600	Strong transcription	Thymus	Thymus
20	chr9:100839800-100847400	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr9:100840000-100847800	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr9:100841600-100848200	Strong transcription	Primary T cells from cord blood	blood
23	chr9:100842000-100847600	Strong transcription	Left Ventricle	heart
24	chr9:100842400-100849800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:100842600-100848400	Strong transcription	Fetal Thymus	thymus
26	chr9:100842800-100847600	Strong transcription	Primary B cells from cord blood	blood
27	chr9:100842800-100850200	Weak transcription	Fetal Heart	heart
28	chr9:100843200-100847400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr9:100843400-100847400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr9:100843800-100847400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr9:100843800-100847400	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr9:100843800-100849800	Weak transcription	Ovary	ovary
33	chr9:100843800-100849800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr9:100844000-100847400	Strong transcription	Gastric	stomach
35	chr9:100844000-100847600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:100844000-100849600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:100844000-100849800	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:100844000-100850000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:100844200-100847800	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr9:100844200-100847800	Strong transcription	Esophagus	oesophagus
41	chr9:100844200-100847800	Strong transcription	HMEC	breast
42	chr9:100844200-100847800	Strong transcription	NHEK	skin
43	chr9:100844400-100847400	Strong transcription	A549	lung
44	chr9:100844400-100847600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr9:100844600-100848800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:100844600-100849400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:100844800-100848200	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr9:100844800-100850000	Weak transcription	Brain Substantia Nigra	brain
49	chr9:100845000-100847600	Strong transcription	Hela-S3	cervix
50	chr9:100845000-100847800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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