Variant report

Variant	rs734769
Chromosome Location	chr9:100844198-100844199
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:100842983..100846250-chr9:100851999..100855804,4	MCF-7	breast:
2	chr9:100818415..100820201-chr9:100844089..100845708,2	MCF-7	breast:
3	chr9:100842838..100844707-chr9:100881208..100883358,2	MCF-7	breast:
4	chr9:100842880..100846056-chr9:100849764..100852020,3	MCF-7	breast:
5	chr9:100842559..100845315-chr9:101012488..101014157,2	MCF-7	breast:
6	chr9:100842650..100845592-chr9:100845952..100848847,2	MCF-7	breast:
7	chr9:100684598..100687225-chr9:100842105..100844747,2	K562	blood:
8	chr9:100843269..100846185-chr9:100848032..100850204,2	K562	blood:
9	chr9:100842280..100844769-chr9:100879230..100881771,2	K562	blood:
10	chr9:100843832..100846656-chr9:100852067..100855805,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106785	Chromatin interaction
ENSG00000136932	Chromatin interaction
ENSG00000095380	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10984930	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10984961	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985049	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10985050	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12554940	0.81[EUR][1000 genomes]
rs1323521	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1323522	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs17806613	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2181583	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2417728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1040483	chr9:100835325-100868437	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
4	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
5	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
6	chr9:100837200-100844400	Weak transcription	Psoas Muscle	Psoas
7	chr9:100837400-100845200	Strong transcription	K562	blood
8	chr9:100838200-100852800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr9:100838600-100848400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr9:100838600-100852000	Strong transcription	GM12878-XiMat	blood
11	chr9:100839000-100845000	Strong transcription	Duodenum Mucosa	Duodenum
12	chr9:100839000-100848400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:100839000-100849600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:100839000-100849800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr9:100839200-100847400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:100839400-100847600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:100839400-100847800	Strong transcription	Fetal Muscle Trunk	muscle
18	chr9:100839400-100848600	Strong transcription	Fetal Stomach	stomach
19	chr9:100839400-100850400	Strong transcription	Dnd41	blood
20	chr9:100839400-100861800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:100839600-100849400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:100839600-100850600	Strong transcription	Thymus	Thymus
23	chr9:100839800-100845200	Strong transcription	Adipose Nuclei	Adipose
24	chr9:100839800-100847400	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr9:100840000-100845000	Strong transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:100840000-100845400	Strong transcription	Spleen	Spleen
27	chr9:100840000-100846000	Strong transcription	Rectal Smooth Muscle	rectum
28	chr9:100840000-100846400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr9:100840000-100846600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:100840000-100846800	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr9:100840000-100847000	Strong transcription	Primary hematopoietic stem cells	blood
32	chr9:100840000-100847800	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr9:100840800-100844400	Weak transcription	Small Intestine	intestine
34	chr9:100841200-100846000	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:100841600-100848200	Strong transcription	Primary T cells from cord blood	blood
36	chr9:100841800-100845400	Strong transcription	Fetal Muscle Leg	muscle
37	chr9:100841800-100845600	Strong transcription	Skeletal Muscle Male	skeletal muscle
38	chr9:100841800-100846400	Genic enhancers	Rectal Mucosa Donor 31	rectum
39	chr9:100842000-100844200	Genic enhancers	Esophagus	oesophagus
40	chr9:100842000-100845600	Genic enhancers	Placenta	Placenta
41	chr9:100842000-100845800	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr9:100842000-100845800	Genic enhancers	HSMMtube	muscle
43	chr9:100842000-100846200	Strong transcription	Brain Cingulate Gyrus	brain
44	chr9:100842000-100846200	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
45	chr9:100842000-100847600	Strong transcription	Left Ventricle	heart
46	chr9:100842400-100846800	Strong transcription	H9 Cell Line	embryonic stem cell
47	chr9:100842400-100849800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr9:100842600-100844200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
49	chr9:100842600-100844200	Genic enhancers	Muscle Satellite Cultured Cells	--
50	chr9:100842600-100844400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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