Variant report

Variant	rs17806613
Chromosome Location	chr9:100828356-100828357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100826223..100828874-chr9:100833109..100834956,2	MCF-7	breast:
2	chr9:100817784..100820803-chr9:100821828..100828564,14	MCF-7	breast:
3	chr9:100744893..100748313-chr9:100827231..100829430,4	MCF-7	breast:
4	chr9:100825593..100828514-chr9:100835972..100838406,3	K562	blood:

Variant related genes	Relation type
ENSG00000095380	Chromatin interaction
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10984930	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10984961	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10985045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10985049	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10985050	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12554318	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12554940	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1323521	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1323522	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2181583	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2417728	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs734769	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482635	chr9:100775549-100953239	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100819600-100848400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr9:100820000-100828400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr9:100820000-100836400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr9:100820000-100836600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr9:100820000-100836600	Weak transcription	Brain Angular Gyrus	brain
6	chr9:100820000-100843000	Weak transcription	Brain Substantia Nigra	brain
7	chr9:100820000-100843200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:100820000-100843200	Weak transcription	Brain Germinal Matrix	brain
9	chr9:100820000-100843200	Weak transcription	Fetal Brain Female	brain
10	chr9:100820000-100847200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr9:100820000-100849600	Weak transcription	Fetal Brain Male	brain
12	chr9:100820000-100850000	Weak transcription	Fetal Kidney	kidney
13	chr9:100820200-100843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:100821000-100836400	Weak transcription	Colon Smooth Muscle	Colon
15	chr9:100821200-100836400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr9:100821200-100836600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:100821200-100849600	Weak transcription	Right Atrium	heart
18	chr9:100821600-100832400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr9:100822200-100832200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr9:100822200-100832400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr9:100822400-100828600	Weak transcription	Stomach Mucosa	stomach
22	chr9:100822400-100829800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr9:100822400-100832200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr9:100822400-100836400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr9:100822400-100836400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr9:100822800-100828600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr9:100822800-100829400	Strong transcription	GM12878-XiMat	blood
28	chr9:100822800-100829600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:100822800-100829800	Strong transcription	Primary T helper cells fromperipheralblood	blood
30	chr9:100822800-100831200	Strong transcription	Fetal Stomach	stomach
31	chr9:100822800-100832200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr9:100822800-100832400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr9:100822800-100833200	Strong transcription	Fetal Intestine Small	intestine
34	chr9:100823000-100828400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr9:100823000-100828600	Strong transcription	Duodenum Smooth Muscle	Duodenum
36	chr9:100823000-100828600	Strong transcription	Left Ventricle	heart
37	chr9:100823000-100828600	Strong transcription	Lung	lung
38	chr9:100823000-100828800	Strong transcription	HUES64 Cell Line	embryonic stem cell
39	chr9:100823000-100828800	Strong transcription	Liver	Liver
40	chr9:100823000-100828800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr9:100823000-100828800	Strong transcription	Fetal Muscle Leg	muscle
42	chr9:100823000-100829000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr9:100823000-100829000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr9:100823000-100829600	Strong transcription	Fetal Muscle Trunk	muscle
45	chr9:100823000-100829800	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr9:100823000-100829800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr9:100823000-100829800	Strong transcription	Duodenum Mucosa	Duodenum
48	chr9:100823000-100830800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr9:100823000-100832200	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr9:100823200-100828800	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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