Variant report

Variant	rs10986359
Chromosome Location	chr9:101233913-101233914
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10119124	1.00[AMR][1000 genomes]
rs10986392	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57034854	1.00[AMR][1000 genomes]
rs57662160	1.00[AMR][1000 genomes]
rs58347401	1.00[AMR][1000 genomes]
rs59511105	1.00[AFR][1000 genomes]
rs73655444	1.00[AMR][1000 genomes]
rs73655464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655465	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655466	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655467	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101226400-101248200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101229800-101235800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:101233200-101234000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:101233400-101235600	Enhancers	Fetal Intestine Large	intestine
5	chr9:101233800-101243800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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