Variant report

Variant	rs10986392
Chromosome Location	chr9:101248815-101248816
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10119124	1.00[AMR][1000 genomes]
rs10986359	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12340370	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28432882	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57034854	1.00[AMR][1000 genomes]
rs57662160	1.00[AMR][1000 genomes]
rs58347401	1.00[AMR][1000 genomes]
rs59511105	0.91[AFR][1000 genomes]
rs73655444	1.00[AMR][1000 genomes]
rs73655464	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655465	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655466	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655467	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6630	chr9:101236324-101267349	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101242800-101250000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr9:101244400-101250200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:101245200-101250000	Weak transcription	NHDF-Ad	bronchial
4	chr9:101246000-101249200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:101247000-101263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:101247400-101250000	Weak transcription	Osteobl	bone
7	chr9:101248200-101250000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:101248400-101264200	Weak transcription	Brain Angular Gyrus	brain
9	chr9:101248800-101250000	Weak transcription	NH-A	brain
10	chr9:101248800-101250200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:101248800-101250200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:101248800-101264200	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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