Variant report

Variant	rs57662160
Chromosome Location	chr9:101179561-101179562
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10119124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10986359	1.00[AMR][1000 genomes]
rs10986392	1.00[AMR][1000 genomes]
rs12340370	1.00[AMR][1000 genomes]
rs28432882	1.00[AMR][1000 genomes]
rs57034854	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58347401	1.00[AMR][1000 genomes]
rs73655444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655464	1.00[AMR][1000 genomes]
rs73655465	1.00[AMR][1000 genomes]
rs73655466	1.00[AMR][1000 genomes]
rs73655467	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101175600-101184400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:101177800-101179600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:101178000-101179600	Enhancers	H9 Cell Line	embryonic stem cell
4	chr9:101178200-101179800	Enhancers	H1 Cell Line	embryonic stem cell
5	chr9:101178800-101181200	Weak transcription	K562	blood
6	chr9:101179200-101180400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:101179400-101179600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:101179400-101179800	Active TSS	ES-WA7 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links