Variant report

Variant	rs57034854
Chromosome Location	chr9:101217727-101217728
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101215201..101217773-chr9:101284476..101287150,2	MCF-7	breast:
2	chr9:101212093..101214362-chr9:101215646..101217981,2	MCF-7	breast:
3	chr9:101216040..101217987-chr9:101243398..101245079,2	MCF-7	breast:
4	chr9:101216257..101218611-chr9:101221134..101223738,2	MCF-7	breast:
5	chr9:101217399..101219402-chr9:101237819..101240488,2	MCF-7	breast:
6	chr9:101216197..101218827-chr9:101218967..101221070,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10119124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10986359	1.00[AMR][1000 genomes]
rs10986392	1.00[AMR][1000 genomes]
rs12340370	1.00[AMR][1000 genomes]
rs28432882	1.00[AMR][1000 genomes]
rs57662160	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58347401	1.00[AMR][1000 genomes]
rs73655444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73655464	1.00[AMR][1000 genomes]
rs73655465	1.00[AMR][1000 genomes]
rs73655466	1.00[AMR][1000 genomes]
rs73655467	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101201000-101221200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101204600-101218000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:101205000-101218200	Weak transcription	Brain Angular Gyrus	brain
4	chr9:101214400-101217800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr9:101215800-101219000	Enhancers	HMEC	breast
6	chr9:101216000-101218800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr9:101216000-101219000	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr9:101216200-101218800	Enhancers	NHEK	skin
9	chr9:101216200-101219000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:101216400-101217800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr9:101216400-101218000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:101216400-101218000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:101216400-101218200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:101216600-101218000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr9:101216600-101218000	Weak transcription	NH-A	brain
16	chr9:101217000-101218800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr9:101217200-101218800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:101217200-101218800	Enhancers	Fetal Intestine Large	intestine
19	chr9:101217400-101218000	Enhancers	Osteobl	bone
20	chr9:101217400-101218800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr9:101217600-101218800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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