Variant report

Variant	rs10988885
Chromosome Location	chr9:102481220-102481221
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10819689	0.81[ASN][1000 genomes]
rs10819694	0.81[ASN][1000 genomes]
rs10988874	0.81[ASN][1000 genomes]
rs10988888	0.86[ASN][1000 genomes]
rs10988889	0.81[ASN][1000 genomes]
rs11791618	0.81[ASN][1000 genomes]
rs11793602	0.81[ASN][1000 genomes]
rs12554755	0.81[ASN][1000 genomes]
rs17736861	0.81[ASN][1000 genomes]
rs17798928	0.81[ASN][1000 genomes]
rs4743356	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102475000-102482000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:102478600-102481800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr9:102479600-102482000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr9:102480200-102483000	Enhancers	Fetal Brain Male	brain
5	chr9:102480600-102482000	Weak transcription	Primary T helper cells PMA-I stimulated	--
6	chr9:102481200-102481600	Active TSS	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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