Variant report
Variant | rs10988874 |
---|---|
Chromosome Location | chr9:102401922-102401923 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr9:102397284..102401122-chr9:102401492..102404469,3 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10117120 | 0.81[CEU][hapmap] |
rs10760693 | 0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs10819689 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10819694 | 0.94[ASN][1000 genomes] |
rs10988853 | 0.82[CEU][hapmap] |
rs10988870 | 0.83[AMR][1000 genomes];0.90[EUR][1000 genomes] |
rs10988885 | 0.81[ASN][1000 genomes] |
rs10988888 | 0.80[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs10988889 | 0.80[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs11787616 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rs11788118 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs11788940 | 0.81[CEU][hapmap] |
rs11791618 | 1.00[ASN][1000 genomes] |
rs11793602 | 0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11794595 | 0.83[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs12554755 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs13294522 | 0.81[CEU][hapmap] |
rs1411364 | 0.81[CEU][hapmap] |
rs17736861 | 0.81[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs17798928 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs41274654 | 0.85[ASN][1000 genomes] |
rs4484755 | 0.82[CEU][hapmap] |
rs58040170 | 0.80[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs7042489 | 0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs7044788 | 0.81[CEU][hapmap] |
rs9886909 | 0.82[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv529618 | chr9:102227922-103044018 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
2 | nsv531599 | chr9:102227922-103156864 | Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
3 | nsv893621 | chr9:102342950-102585545 | Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:102400800-102403800 | Enhancers | Fetal Adrenal Gland | Adrenal Gland |