Variant report

Variant	rs41274654
Chromosome Location	chr9:102595069-102595070
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102592088..102595529-chr9:102596867..102600515,3	K562	blood:
2	chr9:102589376..102591940-chr9:102594219..102596621,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10819689	0.85[ASN][1000 genomes]
rs10819694	0.91[ASN][1000 genomes]
rs10988874	0.85[ASN][1000 genomes]
rs10988888	0.94[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs10988889	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs11791618	0.85[ASN][1000 genomes]
rs11793602	0.85[ASN][1000 genomes]
rs12554755	0.85[ASN][1000 genomes]
rs17736861	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs17798928	0.85[ASN][1000 genomes]
rs2416879	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv528025	chr9:102540386-102613672	Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv893622	chr9:102543355-102595685	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102586800-102609200	Weak transcription	Aorta	Aorta
2	chr9:102587000-102613800	Weak transcription	Hela-S3	cervix
3	chr9:102587400-102608200	Weak transcription	Psoas Muscle	Psoas
4	chr9:102588200-102595400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:102590400-102609600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr9:102590600-102611200	Strong transcription	Primary T helper cells PMA-I stimulated	--
7	chr9:102591200-102618400	Weak transcription	Brain Angular Gyrus	brain
8	chr9:102591400-102595600	Weak transcription	Right Ventricle	heart
9	chr9:102591400-102595800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:102591400-102606800	Weak transcription	Gastric	stomach
11	chr9:102591400-102616200	Weak transcription	Lung	lung
12	chr9:102591600-102607200	Weak transcription	NHLF	lung
13	chr9:102592200-102609400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:102592200-102618400	Weak transcription	Rectal Smooth Muscle	rectum
15	chr9:102592400-102595400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr9:102592400-102595600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr9:102592400-102595600	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr9:102592400-102608200	Weak transcription	Colon Smooth Muscle	Colon
19	chr9:102592600-102595400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:102592600-102595400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr9:102592600-102595400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr9:102592600-102595600	Weak transcription	Left Ventricle	heart
23	chr9:102592600-102595600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:102592600-102609200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr9:102593600-102595400	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr9:102593600-102595400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr9:102593800-102596200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr9:102594200-102613000	Weak transcription	Primary T cells from cord blood	blood
29	chr9:102594200-102622000	Weak transcription	Brain Germinal Matrix	brain
30	chr9:102594400-102598800	Weak transcription	Adipose Nuclei	Adipose
31	chr9:102595000-102597400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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