Variant report

Variant	rs12554755
Chromosome Location	chr9:102485909-102485910
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10760693	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10819689	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819694	0.94[ASN][1000 genomes]
rs10988870	0.81[AMR][1000 genomes]
rs10988874	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988885	0.81[ASN][1000 genomes]
rs10988888	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10988889	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11787616	0.81[EUR][1000 genomes]
rs11788118	0.87[AMR][1000 genomes]
rs11791618	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11793602	1.00[ASN][1000 genomes]
rs11794595	0.81[AMR][1000 genomes]
rs17736861	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17798928	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41274654	0.85[ASN][1000 genomes]
rs58040170	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102481800-102488200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:102483000-102489800	Weak transcription	Aorta	Aorta
3	chr9:102483200-102489000	Weak transcription	Right Atrium	heart
4	chr9:102484200-102486000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr9:102484600-102486000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:102484600-102486200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:102484600-102486200	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr9:102484800-102486200	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr9:102485000-102486000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:102485000-102486200	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr9:102485000-102486200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr9:102485600-102492800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
13	chr9:102485800-102487800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:102485800-102488200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:102485800-102488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr9:102485800-102488800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr9:102485800-102489000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr9:102485800-102489400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links