Variant report

Variant	rs11787616
Chromosome Location	chr9:102372295-102372296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10115727	0.80[AMR][1000 genomes]
rs10117120	0.86[CEU][hapmap]
rs10120175	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10122296	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10760693	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1078065	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1078066	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1078067	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10819686	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10819689	0.86[EUR][1000 genomes]
rs10988853	0.87[CEU][hapmap]
rs10988854	0.83[CEU][hapmap]
rs10988857	0.80[AMR][1000 genomes]
rs10988861	0.80[AMR][1000 genomes]
rs10988863	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10988864	0.80[AMR][1000 genomes]
rs10988868	1.00[ASN][1000 genomes]
rs10988870	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988874	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11788118	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11788940	0.86[CEU][hapmap]
rs11794098	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11794595	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12348405	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12554755	0.81[EUR][1000 genomes]
rs13287636	0.80[AMR][1000 genomes]
rs13294522	0.86[CEU][hapmap]
rs13298159	0.80[AMR][1000 genomes]
rs13298309	0.80[AMR][1000 genomes]
rs13300806	0.80[AMR][1000 genomes]
rs1411364	0.86[CEU][hapmap]
rs17798928	0.80[EUR][1000 genomes]
rs2416763	0.80[AMR][1000 genomes]
rs4422823	0.80[AMR][1000 genomes]
rs4484755	0.87[CEU][hapmap]
rs58040170	0.80[EUR][1000 genomes]
rs7042489	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7044788	0.86[CEU][hapmap]
rs750800	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9886909	0.87[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
4	nsv522018	chr9:102368541-102386706	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102370600-102376600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr9:102370800-102372400	Weak transcription	Fetal Heart	heart
3	chr9:102371400-102372600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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