Variant report

Variant	rs10988861
Chromosome Location	chr9:102323001-102323002
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102322439..102325839-chr9:102332650..102335307,3	MCF-7	breast:
2	chr9:102321674..102324375-chr9:102332166..102335119,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10115727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10117120	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10119077	0.94[EUR][1000 genomes]
rs10120175	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10121114	0.95[EUR][1000 genomes]
rs10122296	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760693	0.82[AMR][1000 genomes]
rs1078065	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078066	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078067	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819686	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988853	1.00[CEU][hapmap]
rs10988854	1.00[CEU][hapmap]
rs10988857	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10988863	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988864	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988870	0.82[AMR][1000 genomes]
rs11787616	0.80[AMR][1000 genomes]
rs11788118	0.81[ASN][1000 genomes]
rs11788940	1.00[CEU][hapmap]
rs11794098	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11794595	0.82[AMR][1000 genomes]
rs12348405	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13287636	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13294522	1.00[CEU][hapmap]
rs13298159	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13298309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13300806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1330173	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411363	0.95[EUR][1000 genomes]
rs1411364	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2416763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4422823	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4484755	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7044788	1.00[CEU][hapmap]
rs750800	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886909	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102319600-102323800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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