Variant report

Variant	rs1078065
Chromosome Location	chr9:102334784-102334785
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102321674..102324375-chr9:102332166..102335119,3	K562	blood:
2	chr9:102334384..102335941-chr9:102344645..102346806,2	K562	blood:
3	chr9:102322439..102325839-chr9:102332650..102335307,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10115727	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10117120	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs10119077	0.84[EUR][1000 genomes]
rs10120175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10121114	0.84[EUR][1000 genomes]
rs10122296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760693	0.82[AMR][1000 genomes]
rs1078066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819686	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988853	0.91[CEU][hapmap]
rs10988854	0.89[CEU][hapmap]
rs10988857	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10988861	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988863	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988870	0.82[AMR][1000 genomes]
rs11787616	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11788118	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11788940	0.91[CEU][hapmap]
rs11794098	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11794595	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12348405	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13287636	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13294522	0.91[CEU][hapmap]
rs13298159	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13298309	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13300806	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1330173	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411363	0.85[EUR][1000 genomes]
rs1411364	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2416763	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4422823	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4484755	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7044788	0.91[CEU][hapmap]
rs750800	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886909	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102329200-102335000	Weak transcription	Psoas Muscle	Psoas
2	chr9:102334000-102335600	Enhancers	Fetal Brain Male	brain
3	chr9:102334200-102335600	Enhancers	Stomach Smooth Muscle	stomach
4	chr9:102334200-102336000	Enhancers	Rectal Smooth Muscle	rectum
5	chr9:102334400-102335800	Enhancers	Fetal Stomach	stomach
6	chr9:102334400-102336600	Enhancers	Colon Smooth Muscle	Colon
7	chr9:102334600-102335800	Enhancers	Right Ventricle	heart
8	chr9:102334600-102335800	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr9:102334600-102336000	Enhancers	Fetal Heart	heart
10	chr9:102334600-102336000	Enhancers	Right Atrium	heart
11	chr9:102334600-102336400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links