Variant report

Variant	rs10988864
Chromosome Location	chr9:102332273-102332274
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102321674..102324375-chr9:102332166..102335119,3	K562	blood:
2	chr9:102325841..102328276-chr9:102329741..102333370,3	K562	blood:
3	chr9:102328135..102330118-chr9:102332004..102333825,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10115727	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10117120	0.91[CEU][hapmap];0.91[GIH][hapmap];0.83[EUR][1000 genomes]
rs10119077	0.83[EUR][1000 genomes]
rs10120175	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10121114	0.83[EUR][1000 genomes]
rs10122296	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10760693	0.82[AMR][1000 genomes]
rs1078065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1078067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819686	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988853	0.91[CEU][hapmap]
rs10988854	0.88[CEU][hapmap]
rs10988857	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10988861	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988863	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988870	0.82[AMR][1000 genomes]
rs11787616	0.80[AMR][1000 genomes]
rs11788118	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11788940	0.90[CEU][hapmap]
rs11794098	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11794595	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12348405	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13287636	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13294522	0.90[CEU][hapmap]
rs13298159	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13298309	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13300806	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1330173	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411363	0.83[EUR][1000 genomes]
rs1411364	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs2416763	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4422823	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4484755	0.91[CEU][hapmap];0.83[EUR][1000 genomes]
rs7044788	0.91[CEU][hapmap];0.95[GIH][hapmap]
rs750800	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9886909	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10988864	FBP1	cis	cerebellum	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102325000-102333200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:102329200-102335000	Weak transcription	Psoas Muscle	Psoas
3	chr9:102329400-102334600	Weak transcription	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links