Variant report
| Variant | rs11788118 |
|---|---|
| Chromosome Location | chr9:102337331-102337332 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:102336273..102339877-chr9:102340403..102342935,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10117120 | 0.82[CEU][hapmap];0.82[GIH][hapmap] |
| rs10120175 | 0.84[AMR][1000 genomes] |
| rs10122296 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10760693 | 0.90[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1078065 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1078066 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1078067 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10819686 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10819689 | 0.90[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs10988853 | 0.82[CEU][hapmap] |
| rs10988854 | 0.83[CEU][hapmap] |
| rs10988861 | 0.81[ASN][1000 genomes] |
| rs10988863 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10988864 | 0.84[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10988870 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10988874 | 0.89[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs11787616 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs11788940 | 0.81[CEU][hapmap] |
| rs11794098 | 0.84[AMR][1000 genomes] |
| rs11794595 | 0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs12348405 | 0.80[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs12554755 | 0.87[AMR][1000 genomes] |
| rs13294522 | 0.81[CEU][hapmap] |
| rs1330173 | 0.81[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1411364 | 0.80[CEU][hapmap] |
| rs17798928 | 0.87[AMR][1000 genomes] |
| rs4484755 | 0.82[CEU][hapmap] |
| rs58040170 | 0.80[AMR][1000 genomes] |
| rs7042489 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7044788 | 0.82[CEU][hapmap];0.86[GIH][hapmap] |
| rs750800 | 0.82[AMR][1000 genomes];0.84[ASN][1000 genomes] |
| rs9886909 | 0.82[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529618 | chr9:102227922-103044018 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 50 gene(s) | inside rSNPs | diseases |
| 2 | nsv531599 | chr9:102227922-103156864 | Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11788118 | FBP1 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:102335600-102338200 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr9:102336600-102339600 | Weak transcription | Right Atrium | heart |
