Variant report

Variant	rs4484755
Chromosome Location	chr9:102293495-102293496
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr9:102293479-102294011	H1-neurons	neurons:	n/a	n/a
2	POLR2A	chr9:102293480-102294050	H1-neurons	neurons:	n/a	n/a
3	REST	chr9:102293276-102294287	H1-neurons	neurons:	n/a	n/a

Variant related genes	Relation type
ENSG00000234860	TF binding region

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10115727	0.95[EUR][1000 genomes]
rs10117120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10119077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10120175	0.86[EUR][1000 genomes]
rs10121114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10122296	0.85[EUR][1000 genomes]
rs1078065	0.85[EUR][1000 genomes]
rs1078066	0.85[EUR][1000 genomes]
rs1078067	0.85[EUR][1000 genomes]
rs10819686	0.85[EUR][1000 genomes]
rs10988853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10988854	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10988857	0.95[EUR][1000 genomes]
rs10988861	0.95[EUR][1000 genomes]
rs10988863	0.84[EUR][1000 genomes]
rs10988864	0.83[EUR][1000 genomes]
rs11788940	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11794098	0.86[EUR][1000 genomes]
rs12348405	0.85[EUR][1000 genomes]
rs13287636	0.95[EUR][1000 genomes]
rs13294522	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13298159	0.95[EUR][1000 genomes]
rs13298309	0.95[EUR][1000 genomes]
rs13300806	0.95[EUR][1000 genomes]
rs1330173	0.95[EUR][1000 genomes]
rs1411363	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1411364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2416763	0.95[EUR][1000 genomes]
rs4422823	0.95[EUR][1000 genomes]
rs7044788	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs750800	0.85[EUR][1000 genomes]
rs9886909	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102292400-102294400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:102293200-102294000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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