Variant report

Variant	rs750800
Chromosome Location	chr9:102335323-102335324
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:102334384..102335941-chr9:102344645..102346806,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10115727	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10117120	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs10119077	0.84[EUR][1000 genomes]
rs10120175	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10121114	0.84[EUR][1000 genomes]
rs10122296	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10760693	0.84[AMR][1000 genomes]
rs1078065	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1078066	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1078067	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10819686	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10988853	0.91[CEU][hapmap]
rs10988854	0.89[CEU][hapmap]
rs10988857	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10988861	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10988863	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10988864	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10988870	0.84[AMR][1000 genomes]
rs11787616	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11788118	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11788940	0.91[CEU][hapmap]
rs11794098	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11794595	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12348405	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13287636	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13294522	0.91[CEU][hapmap]
rs13298159	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13298309	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13300806	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1330173	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1411363	0.85[EUR][1000 genomes]
rs1411364	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs2416763	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4422823	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4484755	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7044788	0.91[CEU][hapmap]
rs9886909	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102334000-102335600	Enhancers	Fetal Brain Male	brain
2	chr9:102334200-102335600	Enhancers	Stomach Smooth Muscle	stomach
3	chr9:102334200-102336000	Enhancers	Rectal Smooth Muscle	rectum
4	chr9:102334400-102335800	Enhancers	Fetal Stomach	stomach
5	chr9:102334400-102336600	Enhancers	Colon Smooth Muscle	Colon
6	chr9:102334600-102335800	Enhancers	Right Ventricle	heart
7	chr9:102334600-102335800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr9:102334600-102336000	Enhancers	Fetal Heart	heart
9	chr9:102334600-102336000	Enhancers	Right Atrium	heart
10	chr9:102334600-102336400	Enhancers	Left Ventricle	heart
11	chr9:102334800-102336000	Enhancers	Fetal Muscle Leg	muscle
12	chr9:102334800-102336000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr9:102335000-102336000	Enhancers	Psoas Muscle	Psoas

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