Variant report

Variant	rs17736861
Chromosome Location	chr9:102497393-102497394
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10760693	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs10819689	1.00[ASN][1000 genomes]
rs10819694	0.94[ASN][1000 genomes]
rs10988874	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988885	0.81[ASN][1000 genomes]
rs10988888	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10988889	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11791618	1.00[ASN][1000 genomes]
rs11791985	0.82[AFR][1000 genomes]
rs11793602	1.00[ASN][1000 genomes]
rs12554755	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17798928	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2416879	1.00[CHB][hapmap]
rs41274654	0.88[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs58040170	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv893621	chr9:102342950-102585545	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102495600-102498000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr9:102495800-102500800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr9:102496200-102500800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr9:102496200-102500800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:102496200-102501200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr9:102497200-102497400	Enhancers	Fetal Muscle Leg	muscle
7	chr9:102497200-102497400	Enhancers	Lung	lung
8	chr9:102497200-102497400	Enhancers	Ovary	ovary
9	chr9:102497200-102497600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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