Variant report

Variant	rs10989078
Chromosome Location	chr9:103168997-103168998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103168940..103170957-chr9:103175150..103176898,2	K562	blood:
2	chr9:103166975..103169241-chr9:103188340..103190441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs1000477	1.00[JPT][hapmap]
rs10465118	0.83[CHD][hapmap];1.00[JPT][hapmap]
rs10465147	1.00[JPT][hapmap]
rs10465148	1.00[JPT][hapmap]
rs10465149	1.00[JPT][hapmap]
rs10512270	1.00[JPT][hapmap]
rs10512271	1.00[JPT][hapmap]
rs10819773	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10819776	1.00[JPT][hapmap]
rs10819782	1.00[JPT][hapmap]
rs10819785	1.00[JPT][hapmap]
rs10819787	1.00[JPT][hapmap]
rs10819788	1.00[JPT][hapmap]
rs10819789	1.00[JPT][hapmap]
rs10989081	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.86[ASN][1000 genomes]
rs10989082	0.92[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.83[ASN][1000 genomes]
rs10989085	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs10989094	1.00[JPT][hapmap]
rs10989097	1.00[JPT][hapmap]
rs10989103	1.00[JPT][hapmap]
rs10989105	1.00[JPT][hapmap]
rs10989107	1.00[JPT][hapmap]
rs10989111	1.00[JPT][hapmap]
rs10989112	1.00[JPT][hapmap]
rs10989113	1.00[JPT][hapmap]
rs10989114	1.00[JPT][hapmap]
rs10989115	1.00[JPT][hapmap]
rs10989120	0.81[JPT][hapmap]
rs10989123	1.00[JPT][hapmap]
rs10989127	1.00[JPT][hapmap]
rs10989130	1.00[JPT][hapmap]
rs10989131	1.00[JPT][hapmap]
rs10989144	1.00[JPT][hapmap]
rs10989145	1.00[JPT][hapmap]
rs10989146	1.00[JPT][hapmap]
rs10989147	1.00[JPT][hapmap]
rs10989150	0.82[JPT][hapmap]
rs10989161	0.82[JPT][hapmap]
rs10989162	0.82[JPT][hapmap]
rs10989163	0.82[JPT][hapmap]
rs10989164	0.82[JPT][hapmap]
rs10989165	0.82[JPT][hapmap]
rs10989167	0.82[JPT][hapmap]
rs10989169	0.82[JPT][hapmap]
rs10989170	0.82[JPT][hapmap]
rs11793014	1.00[JPT][hapmap]
rs12004257	1.00[JPT][hapmap]
rs12056981	1.00[JPT][hapmap]
rs12236071	1.00[JPT][hapmap]
rs12237481	1.00[JPT][hapmap]
rs12238560	1.00[JPT][hapmap]
rs12683122	0.81[CHD][hapmap];1.00[JPT][hapmap]
rs12683548	1.00[JPT][hapmap]
rs12683889	0.82[JPT][hapmap]
rs12684438	0.85[CHB][hapmap];0.86[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.88[ASN][1000 genomes]
rs12684454	1.00[JPT][hapmap]
rs1332598	1.00[JPT][hapmap]
rs16919174	1.00[JPT][hapmap]
rs16919204	0.81[JPT][hapmap]
rs16919211	0.82[JPT][hapmap]
rs1930246	1.00[JPT][hapmap]
rs2026423	1.00[JPT][hapmap]
rs2069236	1.00[JPT][hapmap]
rs2151106	1.00[JPT][hapmap]
rs2183989	1.00[JPT][hapmap]
rs2183990	1.00[JPT][hapmap]
rs2183991	1.00[JPT][hapmap]
rs2274881	1.00[JPT][hapmap]
rs2274882	1.00[JPT][hapmap]
rs7028822	1.00[JPT][hapmap]
rs7029001	1.00[JPT][hapmap]
rs7031884	0.85[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs7042669	1.00[JPT][hapmap]
rs7046596	0.86[ASN][1000 genomes]
rs7046659	1.00[JPT][hapmap]
rs72733399	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10989078	ERP44	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103168800-103170000	Enhancers	K562	blood

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