Variant report

Variant	rs10989150
Chromosome Location	chr9:103308996-103308997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:120)

rs_ID	r²[population]
rs1000477	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs10465118	1.00[CEU][hapmap];0.82[JPT][hapmap];0.90[EUR][1000 genomes]
rs10465119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10465145	0.95[EUR][1000 genomes]
rs10465147	0.81[CHB][hapmap];0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs10465148	0.94[CHB][hapmap];0.82[JPT][hapmap];0.99[ASN][1000 genomes]
rs10465149	0.94[CHB][hapmap];0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs10512270	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10512271	1.00[CEU][hapmap];0.88[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10819775	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10819776	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap]
rs10819779	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10819781	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10819782	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs10819785	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs10819787	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs10819788	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10819789	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs10819790	0.88[ASN][1000 genomes]
rs10989078	0.82[JPT][hapmap]
rs10989082	0.82[JPT][hapmap]
rs10989085	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs10989091	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989094	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10989095	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989097	0.94[CHB][hapmap];0.82[JPT][hapmap]
rs10989099	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989103	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989105	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs10989107	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989108	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989111	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989112	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap]
rs10989113	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989114	1.00[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989115	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989120	1.00[CHB][hapmap];0.80[CHD][hapmap]
rs10989121	0.87[ASN][1000 genomes]
rs10989123	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs10989124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10989127	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.99[ASN][1000 genomes]
rs10989130	0.94[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs10989131	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10989134	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989135	0.88[ASN][1000 genomes]
rs10989140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10989142	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10989143	0.88[ASN][1000 genomes]
rs10989144	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989145	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10989146	0.94[CHB][hapmap];0.81[JPT][hapmap];0.99[ASN][1000 genomes]
rs10989147	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10989151	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10989152	0.81[CHB][hapmap];0.93[ASN][1000 genomes]
rs10989153	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs10989154	0.82[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10989156	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs10989161	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10989162	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10989163	1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs10989164	1.00[CEU][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs10989165	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs10989167	1.00[CEU][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap]
rs10989169	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs11793014	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs12004257	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap]
rs12056981	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12235981	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs12236071	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12236952	0.86[EUR][1000 genomes]
rs12236970	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs12237481	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12238560	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12682741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12683122	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12683548	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12683889	1.00[CEU][hapmap]
rs12684438	0.82[JPT][hapmap]
rs12684454	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs1332598	0.94[CHB][hapmap];0.82[JPT][hapmap];0.99[ASN][1000 genomes]
rs16919136	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919174	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16919204	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs16919211	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs1930237	0.89[ASN][1000 genomes]
rs1930246	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap]
rs1931140	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs2026423	0.94[CHB][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs2069236	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs2151106	0.94[CHB][hapmap];0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs2183989	0.94[CHB][hapmap];0.84[JPT][hapmap];0.99[ASN][1000 genomes]
rs2183990	0.84[JPT][hapmap]
rs2183991	0.84[JPT][hapmap]
rs2274881	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2274882	0.88[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.89[ASN][1000 genomes]
rs34816846	0.90[ASN][1000 genomes]
rs55827987	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56012200	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56020062	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56050588	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56122790	0.95[EUR][1000 genomes]
rs56163523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56170030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59565932	0.89[ASN][1000 genomes]
rs59611728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59823190	0.93[ASN][1000 genomes]
rs7021028	0.88[CHB][hapmap];0.93[ASN][1000 genomes]
rs7024666	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7028822	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs7029001	0.94[CHB][hapmap];0.84[JPT][hapmap];0.89[ASN][1000 genomes]
rs7038306	0.99[ASN][1000 genomes]
rs7042669	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs7046659	0.94[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap]
rs72735107	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72735119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735122	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72735140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72735154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7850353	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
2	chr9:103263200-103312200	Weak transcription	Fetal Kidney	kidney
3	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
4	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
5	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
6	chr9:103279600-103312000	Weak transcription	HSMM	muscle
7	chr9:103296800-103316600	Weak transcription	HSMMtube	muscle
8	chr9:103297000-103312800	Weak transcription	Brain Anterior Caudate	brain
9	chr9:103297400-103312000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:103300200-103327400	Weak transcription	Ovary	ovary
11	chr9:103300800-103319800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr9:103302400-103312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:103302400-103313000	Weak transcription	Fetal Lung	lung
14	chr9:103303200-103309000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:103303400-103309000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:103305200-103309600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:103307400-103311000	Weak transcription	Brain Hippocampus Middle	brain
18	chr9:103307400-103311200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr9:103307400-103311400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr9:103307400-103311600	Weak transcription	Brain Angular Gyrus	brain
21	chr9:103307400-103313000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr9:103307400-103316200	Weak transcription	Brain Substantia Nigra	brain
23	chr9:103307400-103316600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr9:103307400-103316600	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:103307400-103317400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr9:103307400-103323600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:103307400-103331800	Weak transcription	Gastric	stomach
28	chr9:103307400-103332200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
29	chr9:103307400-103341800	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr9:103307400-103347800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:103307600-103313200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:103307600-103320600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr9:103307800-103311400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:103307800-103312400	Weak transcription	Brain Cingulate Gyrus	brain
35	chr9:103307800-103312600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr9:103307800-103313600	Weak transcription	Fetal Stomach	stomach
37	chr9:103308000-103309400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr9:103308000-103319400	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:103308000-103321400	Strong transcription	HUES64 Cell Line	embryonic stem cell
40	chr9:103308000-103321600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:103308000-103327200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr9:103308000-103340200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr9:103308200-103310800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr9:103308400-103311000	Weak transcription	Fetal Brain Female	brain
45	chr9:103308600-103309000	Strong transcription	Brain Germinal Matrix	brain
46	chr9:103308600-103311200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr9:103308600-103345400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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