Variant report

Variant	rs56122790
Chromosome Location	chr9:103176747-103176748
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:103168940..103170957-chr9:103175150..103176898,2	K562	blood:
2	chr9:103171653..103179256-chr9:103186952..103193020,13	MCF-7	breast:
3	chr9:103174960..103177942-chr9:103180157..103183043,3	K562	blood:
4	chr9:103174411..103177226-chr9:103182335..103184349,2	K562	blood:
5	chr9:103115166..103116974-chr9:103176601..103179072,2	K562	blood:

Variant related genes	Relation type
ENSG00000136891	Chromatin interaction
ENSG00000066697	Chromatin interaction

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs1041565	0.88[ASN][1000 genomes]
rs10465118	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465119	0.95[EUR][1000 genomes]
rs10465145	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512270	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10512271	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10819774	1.00[ASN][1000 genomes]
rs10819775	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819776	0.91[ASN][1000 genomes]
rs10819779	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10819781	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10819782	0.89[ASN][1000 genomes]
rs10819785	0.88[ASN][1000 genomes]
rs10819786	0.88[ASN][1000 genomes]
rs10819787	0.88[ASN][1000 genomes]
rs10819788	0.88[ASN][1000 genomes]
rs10989085	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989090	0.88[ASN][1000 genomes]
rs10989091	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989092	0.91[ASN][1000 genomes]
rs10989093	0.88[ASN][1000 genomes]
rs10989094	0.91[ASN][1000 genomes]
rs10989095	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10989097	0.89[ASN][1000 genomes]
rs10989099	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10989103	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989105	0.88[ASN][1000 genomes]
rs10989107	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989108	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989111	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989112	0.88[ASN][1000 genomes]
rs10989113	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989114	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989115	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989120	0.88[ASN][1000 genomes]
rs10989123	0.88[ASN][1000 genomes]
rs10989124	0.95[EUR][1000 genomes]
rs10989131	0.95[EUR][1000 genomes]
rs10989134	0.82[EUR][1000 genomes]
rs10989140	0.95[EUR][1000 genomes]
rs10989144	0.95[EUR][1000 genomes]
rs10989145	0.95[EUR][1000 genomes]
rs10989147	0.95[EUR][1000 genomes]
rs10989150	0.95[EUR][1000 genomes]
rs10989151	0.95[EUR][1000 genomes]
rs10989154	0.95[EUR][1000 genomes]
rs11793014	0.88[ASN][1000 genomes]
rs12004257	0.90[ASN][1000 genomes]
rs12005378	0.80[ASN][1000 genomes]
rs12056981	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12057047	0.88[ASN][1000 genomes]
rs12236071	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12236952	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12237166	0.89[ASN][1000 genomes]
rs12237481	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12238560	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12682741	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12683122	0.95[EUR][1000 genomes]
rs12683548	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12684454	0.89[ASN][1000 genomes]
rs13286805	0.88[ASN][1000 genomes]
rs13292589	0.88[ASN][1000 genomes]
rs16919136	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16919174	0.95[EUR][1000 genomes]
rs1930245	0.89[ASN][1000 genomes]
rs1930246	0.89[ASN][1000 genomes]
rs2183990	1.00[ASN][1000 genomes]
rs2183991	1.00[ASN][1000 genomes]
rs2274881	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34471402	0.88[ASN][1000 genomes]
rs55827987	0.95[EUR][1000 genomes]
rs56012200	0.86[EUR][1000 genomes]
rs56020062	0.86[EUR][1000 genomes]
rs56050588	0.86[EUR][1000 genomes]
rs56163523	0.95[EUR][1000 genomes]
rs56170030	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59611728	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7024666	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7034154	0.89[ASN][1000 genomes]
rs7041933	0.89[ASN][1000 genomes]
rs7042669	0.88[ASN][1000 genomes]
rs7046659	0.89[ASN][1000 genomes]
rs7049241	0.88[ASN][1000 genomes]
rs72735107	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735110	1.00[ASN][1000 genomes]
rs72735119	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72735122	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72735140	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72735148	0.95[EUR][1000 genomes]
rs72735154	0.95[EUR][1000 genomes]
rs7869933	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103174600-103176800	Weak transcription	Placenta	Placenta
2	chr9:103174600-103177000	Weak transcription	Right Atrium	heart
3	chr9:103174600-103188800	Weak transcription	Esophagus	oesophagus
4	chr9:103174800-103177600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr9:103175600-103176800	Enhancers	K562	blood

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