Variant report

Variant	rs72735154
Chromosome Location	chr9:103282261-103282262
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:103281981..103284118-chr9:103285879..103288033,2	MCF-7	breast:

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:88)

rs_ID	r²[population]
rs1000477	0.88[ASN][1000 genomes]
rs10465118	0.90[EUR][1000 genomes]
rs10465119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10465145	0.95[EUR][1000 genomes]
rs10465147	1.00[ASN][1000 genomes]
rs10465148	1.00[ASN][1000 genomes]
rs10465149	1.00[ASN][1000 genomes]
rs10512270	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10512271	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10819775	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs10819779	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10819781	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10819789	0.90[ASN][1000 genomes]
rs10819790	0.89[ASN][1000 genomes]
rs10989085	1.00[EUR][1000 genomes]
rs10989091	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989095	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989099	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989107	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989108	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989121	0.88[ASN][1000 genomes]
rs10989124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989127	1.00[ASN][1000 genomes]
rs10989130	0.90[ASN][1000 genomes]
rs10989131	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989134	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10989135	0.89[ASN][1000 genomes]
rs10989140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10989142	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10989143	0.89[ASN][1000 genomes]
rs10989144	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10989145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10989146	1.00[ASN][1000 genomes]
rs10989147	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989150	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10989151	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989152	0.92[ASN][1000 genomes]
rs10989153	0.92[ASN][1000 genomes]
rs10989154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10989156	0.92[ASN][1000 genomes]
rs12056981	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12235981	0.92[ASN][1000 genomes]
rs12236071	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12236952	0.86[EUR][1000 genomes]
rs12236970	0.92[ASN][1000 genomes]
rs12237481	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12238560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12682741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12683122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12683548	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1332598	1.00[ASN][1000 genomes]
rs16919136	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919174	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1930237	0.90[ASN][1000 genomes]
rs1931140	0.92[ASN][1000 genomes]
rs2026423	0.90[ASN][1000 genomes]
rs2069236	0.87[ASN][1000 genomes]
rs2151106	1.00[ASN][1000 genomes]
rs2183989	1.00[ASN][1000 genomes]
rs2274881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2274882	0.88[ASN][1000 genomes]
rs34816846	0.89[ASN][1000 genomes]
rs55827987	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56012200	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56020062	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56050588	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56122790	0.95[EUR][1000 genomes]
rs56163523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56170030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59565932	0.90[ASN][1000 genomes]
rs59611728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59823190	0.92[ASN][1000 genomes]
rs7021028	0.92[ASN][1000 genomes]
rs7024666	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7028822	0.88[ASN][1000 genomes]
rs7029001	0.90[ASN][1000 genomes]
rs7038306	1.00[ASN][1000 genomes]
rs72735107	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72735119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735122	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72735140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72735148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7850353	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103255600-103301600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:103256200-103287400	Weak transcription	HSMMtube	muscle
3	chr9:103257000-103289400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:103258600-103296400	Weak transcription	Brain Anterior Caudate	brain
5	chr9:103260800-103287200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr9:103261200-103287600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart
8	chr9:103263200-103312200	Weak transcription	Fetal Kidney	kidney
9	chr9:103263400-103327600	Weak transcription	Aorta	Aorta
10	chr9:103269400-103287000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
11	chr9:103270000-103289200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr9:103270200-103287200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr9:103270400-103283000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:103270800-103290000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr9:103272600-103307000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:103272800-103283600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:103272800-103285400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:103273000-103285200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr9:103273000-103303600	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:103273200-103283800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:103273400-103289400	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr9:103273600-103287200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr9:103273600-103337600	Weak transcription	NHDF-Ad	bronchial
24	chr9:103273800-103283600	Weak transcription	Fetal Brain Female	brain
25	chr9:103273800-103287200	Weak transcription	Brain Germinal Matrix	brain
26	chr9:103274400-103289400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr9:103278000-103287800	Strong transcription	HUES64 Cell Line	embryonic stem cell
28	chr9:103278200-103289600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr9:103278400-103286000	Weak transcription	Fetal Lung	lung
30	chr9:103278400-103288200	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr9:103278400-103306400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:103278400-103333000	Weak transcription	Fetal Brain Male	brain
33	chr9:103278600-103287000	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr9:103278800-103288000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr9:103279000-103287600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr9:103279600-103312000	Weak transcription	HSMM	muscle
37	chr9:103280800-103296200	Weak transcription	Brain Hippocampus Middle	brain
38	chr9:103281000-103283600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr9:103281200-103283200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:103282200-103283400	Enhancers	Brain Inferior Temporal Lobe	brain
41	chr9:103282200-103286600	Weak transcription	Brain Substantia Nigra	brain

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