Variant report

Variant	rs10989113
Chromosome Location	chr9:103255105-103255106
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 141 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:138)

rs_ID	r²[population]
rs1000477	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1041565	1.00[ASN][1000 genomes]
rs10465118	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10465119	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10465145	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10465147	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs10465148	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10465149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10512270	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10512271	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819773	0.90[JPT][hapmap]
rs10819774	0.82[CHB][hapmap];0.88[ASN][1000 genomes]
rs10819775	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10819776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10819779	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10819781	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10819782	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10819785	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10819786	1.00[ASN][1000 genomes]
rs10819787	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10819788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10819789	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10819790	0.86[ASN][1000 genomes]
rs10989078	1.00[JPT][hapmap]
rs10989081	0.91[JPT][hapmap]
rs10989082	1.00[JPT][hapmap]
rs10989085	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10989090	0.91[ASN][1000 genomes]
rs10989091	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10989092	0.95[ASN][1000 genomes]
rs10989093	0.91[ASN][1000 genomes]
rs10989094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10989095	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10989097	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10989099	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10989103	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989105	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989107	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989108	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989111	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989114	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989120	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989121	0.90[ASN][1000 genomes]
rs10989123	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989124	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10989127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10989130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10989131	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10989134	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10989135	0.86[ASN][1000 genomes]
rs10989140	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989142	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10989143	0.86[ASN][1000 genomes]
rs10989144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10989145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10989146	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10989147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989150	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989151	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10989152	0.87[CHB][hapmap]
rs10989153	0.93[CHB][hapmap]
rs10989154	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10989156	0.94[CHB][hapmap]
rs10989161	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap]
rs10989162	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap]
rs10989163	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]
rs10989164	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]
rs10989165	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap]
rs10989167	1.00[CEU][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap]
rs10989169	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs10989170	0.82[JPT][hapmap]
rs11793014	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12004257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12005378	0.84[ASN][1000 genomes]
rs12056981	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12057047	1.00[ASN][1000 genomes]
rs12235981	0.94[CHB][hapmap]
rs12236071	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12236952	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236970	0.93[CHB][hapmap]
rs12237166	0.97[ASN][1000 genomes]
rs12237481	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12238560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12682741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12683122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12683548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12683889	1.00[CEU][hapmap];0.82[JPT][hapmap]
rs12684438	1.00[JPT][hapmap]
rs12684454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13286805	1.00[ASN][1000 genomes]
rs13292589	1.00[ASN][1000 genomes]
rs1332598	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16919136	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16919174	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16919204	1.00[CEU][hapmap];0.83[JPT][hapmap];0.83[YRI][hapmap]
rs16919211	1.00[CEU][hapmap];0.84[JPT][hapmap];0.83[YRI][hapmap]
rs1930237	0.87[ASN][1000 genomes]
rs1930245	0.97[ASN][1000 genomes]
rs1930246	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1931140	0.94[CHB][hapmap]
rs2026423	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2069236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2151106	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2183989	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2183990	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2183991	0.82[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2274881	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2274882	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs34471402	1.00[ASN][1000 genomes]
rs55827987	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56012200	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56020062	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56050588	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56122790	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs56163523	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56170030	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59565932	0.87[ASN][1000 genomes]
rs59611728	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7021028	0.93[CHB][hapmap]
rs7024666	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7028822	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7029001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7031884	0.82[JPT][hapmap]
rs7034154	0.97[ASN][1000 genomes]
rs7041933	0.97[ASN][1000 genomes]
rs7042669	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7046659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7049241	1.00[ASN][1000 genomes]
rs72735107	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72735110	0.88[ASN][1000 genomes]
rs72735119	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72735122	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72735140	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72735154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7869933	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103238200-103264200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:103238200-103274600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:103249200-103255200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr9:103251600-103257000	Weak transcription	HUVEC	blood vessel
5	chr9:103251600-103258600	Enhancers	Brain Substantia Nigra	brain
6	chr9:103251800-103256200	Enhancers	Brain Hippocampus Middle	brain
7	chr9:103252000-103258600	Enhancers	Brain Anterior Caudate	brain
8	chr9:103252400-103255200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:103252400-103256200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:103252600-103257000	Weak transcription	Brain Germinal Matrix	brain
11	chr9:103253000-103255400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:103253200-103255200	Weak transcription	Fetal Brain Male	brain
13	chr9:103253800-103256200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:103254000-103255200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:103254000-103255200	Weak transcription	HSMMtube	muscle
16	chr9:103254000-103255400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:103254400-103255600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr9:103254600-103255800	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr9:103254600-103256000	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr9:103254600-103256400	Enhancers	ES-I3 Cell Line	embryonic stem cell
21	chr9:103254600-103256400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr9:103254800-103255200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr9:103254800-103255200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr9:103254800-103255600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr9:103254800-103255600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:103254800-103255600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr9:103254800-103255600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr9:103254800-103255600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr9:103254800-103255800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr9:103254800-103256000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr9:103254800-103256400	Enhancers	Brain Cingulate Gyrus	brain
32	chr9:103254800-103257000	Enhancers	Brain Angular Gyrus	brain
33	chr9:103255000-103255400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr9:103255000-103255600	Enhancers	Fetal Brain Female	brain
35	chr9:103255000-103255600	Enhancers	GM12878-XiMat	blood
36	chr9:103255000-103255800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
37	chr9:103255000-103255800	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:103255000-103255800	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr9:103255000-103256000	Enhancers	HSMM	muscle
40	chr9:103255000-103256200	Enhancers	H1 Cell Line	embryonic stem cell

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