Variant report

Variant	rs10989105
Chromosome Location	chr9:103239432-103239433
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 138 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:135)

rs_ID	r²[population]
rs1000477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1041565	1.00[ASN][1000 genomes]
rs10465118	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10465145	0.88[ASN][1000 genomes]
rs10465147	0.91[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10465148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10465149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10512270	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10512271	0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10819773	0.90[JPT][hapmap];0.81[YRI][hapmap]
rs10819774	0.82[CHB][hapmap];0.86[YRI][hapmap];0.88[ASN][1000 genomes]
rs10819775	0.88[ASN][1000 genomes]
rs10819776	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10819779	0.95[ASN][1000 genomes]
rs10819781	0.97[ASN][1000 genomes]
rs10819782	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10819785	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819786	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819787	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819788	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10819789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10819790	0.86[ASN][1000 genomes]
rs10989078	1.00[JPT][hapmap]
rs10989081	0.91[JPT][hapmap]
rs10989082	1.00[JPT][hapmap];0.81[YRI][hapmap]
rs10989085	0.81[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs10989090	0.91[ASN][1000 genomes]
rs10989091	0.93[ASN][1000 genomes]
rs10989092	0.95[ASN][1000 genomes]
rs10989093	0.91[ASN][1000 genomes]
rs10989094	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10989095	0.95[ASN][1000 genomes]
rs10989097	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs10989099	0.97[ASN][1000 genomes]
rs10989103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989107	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989108	1.00[ASN][1000 genomes]
rs10989111	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989112	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989113	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989114	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989115	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989120	1.00[CHB][hapmap];0.83[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989121	0.90[ASN][1000 genomes]
rs10989123	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10989124	0.87[ASN][1000 genomes]
rs10989127	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10989130	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10989131	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10989134	0.86[ASN][1000 genomes]
rs10989135	0.86[ASN][1000 genomes]
rs10989142	0.86[ASN][1000 genomes]
rs10989143	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10989144	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs10989145	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs10989146	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10989147	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10989150	0.94[CHB][hapmap];0.84[JPT][hapmap]
rs10989151	0.85[ASN][1000 genomes]
rs10989152	1.00[CEU][hapmap];0.87[CHB][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10989153	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10989154	0.94[CHB][hapmap]
rs10989156	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10989161	0.84[JPT][hapmap]
rs10989162	0.84[JPT][hapmap]
rs10989163	0.82[JPT][hapmap]
rs10989164	0.82[JPT][hapmap]
rs10989165	0.84[JPT][hapmap]
rs10989167	0.82[JPT][hapmap]
rs10989169	0.82[JPT][hapmap]
rs10989170	0.82[JPT][hapmap]
rs11793014	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12004257	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12005378	0.84[ASN][1000 genomes]
rs12056981	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12057047	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235981	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12236071	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12236952	1.00[ASN][1000 genomes]
rs12236970	0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12237166	0.97[ASN][1000 genomes]
rs12237481	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12238560	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12682741	0.97[ASN][1000 genomes]
rs12683122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12683548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12683889	0.82[JPT][hapmap]
rs12684438	1.00[JPT][hapmap]
rs12684454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs13286805	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13292589	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332598	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16919136	1.00[ASN][1000 genomes]
rs16919174	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16919204	0.83[JPT][hapmap]
rs16919211	0.84[JPT][hapmap]
rs1930237	0.87[ASN][1000 genomes]
rs1930245	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1930246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931140	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2026423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2069236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2151106	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2183989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2183990	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs2183991	0.82[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.88[ASN][1000 genomes]
rs2274881	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2274882	0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs34471402	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34816846	0.86[EUR][1000 genomes]
rs56050588	0.82[ASN][1000 genomes]
rs56122790	0.88[ASN][1000 genomes]
rs56170030	1.00[ASN][1000 genomes]
rs59565932	0.87[ASN][1000 genomes]
rs59611728	0.99[ASN][1000 genomes]
rs59823190	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7021028	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7024666	0.97[ASN][1000 genomes]
rs7028822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7029001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031884	0.82[JPT][hapmap]
rs7034154	0.97[ASN][1000 genomes]
rs7038306	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7041933	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs7042669	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046659	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs7049241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735107	0.88[ASN][1000 genomes]
rs72735110	0.88[ASN][1000 genomes]
rs72735119	0.95[ASN][1000 genomes]
rs72735122	0.95[ASN][1000 genomes]
rs72735140	1.00[ASN][1000 genomes]
rs72735148	0.90[ASN][1000 genomes]
rs7850353	0.85[EUR][1000 genomes]
rs7869933	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv825012	chr9:103152205-103256281	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
3	nsv614955	chr9:103181596-103261227	ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103236600-103241800	Weak transcription	Psoas Muscle	Psoas
2	chr9:103237000-103251600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr9:103237200-103241800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr9:103237600-103240400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:103238000-103240400	Weak transcription	Brain Angular Gyrus	brain
6	chr9:103238000-103240400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:103238000-103248600	Weak transcription	Brain Hippocampus Middle	brain
8	chr9:103238200-103240400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr9:103238200-103242200	Weak transcription	Brain Germinal Matrix	brain
10	chr9:103238200-103249000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr9:103238200-103251600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:103238200-103252000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr9:103238200-103264200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr9:103238200-103274600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr9:103238400-103239800	Weak transcription	Fetal Brain Female	brain
16	chr9:103238400-103240200	Weak transcription	Brain Anterior Caudate	brain
17	chr9:103238400-103240400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr9:103238400-103241800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:103238400-103243200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:103238400-103251400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr9:103238400-103251400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:103238400-103251800	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr9:103238600-103240400	Weak transcription	Brain Substantia Nigra	brain
24	chr9:103238600-103242800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr9:103238600-103243200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr9:103238600-103251800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr9:103238800-103240600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr9:103239200-103239600	Enhancers	NHDF-Ad	bronchial
29	chr9:103239400-103240400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr9:103239400-103242200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links