Variant report

Variant	rs34471402
Chromosome Location	chr9:103262534-103262535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:114)

rs_ID	r²[population]
rs1000477	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1041565	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10465118	0.88[ASN][1000 genomes]
rs10465145	0.88[ASN][1000 genomes]
rs10465147	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10465148	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10512270	0.95[ASN][1000 genomes]
rs10512271	1.00[ASN][1000 genomes]
rs10819774	0.88[ASN][1000 genomes]
rs10819775	0.88[ASN][1000 genomes]
rs10819776	0.82[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10819779	0.95[ASN][1000 genomes]
rs10819781	0.97[ASN][1000 genomes]
rs10819782	0.97[ASN][1000 genomes]
rs10819785	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819786	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819787	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10819788	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10819789	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10819790	0.86[ASN][1000 genomes]
rs10989085	0.88[ASN][1000 genomes]
rs10989090	0.91[ASN][1000 genomes]
rs10989091	0.93[ASN][1000 genomes]
rs10989092	0.95[ASN][1000 genomes]
rs10989093	0.91[ASN][1000 genomes]
rs10989094	0.95[ASN][1000 genomes]
rs10989095	0.95[ASN][1000 genomes]
rs10989097	0.97[ASN][1000 genomes]
rs10989099	0.97[ASN][1000 genomes]
rs10989103	1.00[ASN][1000 genomes]
rs10989105	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10989107	1.00[ASN][1000 genomes]
rs10989108	1.00[ASN][1000 genomes]
rs10989111	1.00[ASN][1000 genomes]
rs10989112	1.00[ASN][1000 genomes]
rs10989113	1.00[ASN][1000 genomes]
rs10989114	1.00[ASN][1000 genomes]
rs10989115	1.00[ASN][1000 genomes]
rs10989120	0.80[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10989121	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10989123	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10989124	0.87[ASN][1000 genomes]
rs10989127	0.80[AMR][1000 genomes]
rs10989130	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10989131	0.87[ASN][1000 genomes]
rs10989134	0.86[ASN][1000 genomes]
rs10989135	0.80[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs10989142	0.86[ASN][1000 genomes]
rs10989143	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10989144	0.86[ASN][1000 genomes]
rs10989145	0.87[ASN][1000 genomes]
rs10989146	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10989151	0.85[ASN][1000 genomes]
rs10989152	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10989153	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10989156	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11793014	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12004257	0.98[ASN][1000 genomes]
rs12005378	0.84[ASN][1000 genomes]
rs12056981	0.97[ASN][1000 genomes]
rs12057047	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12235981	0.91[EUR][1000 genomes]
rs12236071	0.97[ASN][1000 genomes]
rs12236952	1.00[ASN][1000 genomes]
rs12236970	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12237166	0.97[ASN][1000 genomes]
rs12237481	0.98[ASN][1000 genomes]
rs12238560	1.00[ASN][1000 genomes]
rs12682741	0.97[ASN][1000 genomes]
rs12683122	0.87[ASN][1000 genomes]
rs12683548	0.97[ASN][1000 genomes]
rs12684454	0.97[ASN][1000 genomes]
rs13286805	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13292589	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1332598	0.80[AMR][1000 genomes]
rs16919136	1.00[ASN][1000 genomes]
rs16919174	0.85[ASN][1000 genomes]
rs1930237	0.87[ASN][1000 genomes]
rs1930245	0.97[ASN][1000 genomes]
rs1930246	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1931140	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2026423	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2069236	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2151106	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2183989	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2183990	0.88[ASN][1000 genomes]
rs2183991	0.88[ASN][1000 genomes]
rs2274881	1.00[ASN][1000 genomes]
rs2274882	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs34816846	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56050588	0.82[ASN][1000 genomes]
rs56122790	0.88[ASN][1000 genomes]
rs56170030	1.00[ASN][1000 genomes]
rs59565932	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs59611728	0.99[ASN][1000 genomes]
rs59823190	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7021028	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7024666	0.97[ASN][1000 genomes]
rs7028822	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7029001	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7034154	0.97[ASN][1000 genomes]
rs7038306	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7041933	0.97[ASN][1000 genomes]
rs7042669	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7046659	0.97[ASN][1000 genomes]
rs7049241	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72735107	0.88[ASN][1000 genomes]
rs72735110	0.88[ASN][1000 genomes]
rs72735119	0.95[ASN][1000 genomes]
rs72735122	0.95[ASN][1000 genomes]
rs72735140	1.00[ASN][1000 genomes]
rs72735148	0.90[ASN][1000 genomes]
rs7850353	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7869933	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893623	chr9:102648036-103405197	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103238200-103264200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:103238200-103274600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:103255200-103271000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr9:103255400-103277600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:103255600-103265800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:103255600-103266000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr9:103255600-103272400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:103255600-103272400	Weak transcription	Fetal Brain Female	brain
9	chr9:103255600-103301600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:103255800-103266000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr9:103255800-103272400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:103256200-103265000	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr9:103256200-103287400	Weak transcription	HSMMtube	muscle
14	chr9:103256400-103271600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr9:103257000-103272400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:103257000-103289400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr9:103258200-103263600	Weak transcription	Brain Germinal Matrix	brain
18	chr9:103258600-103296400	Weak transcription	Brain Anterior Caudate	brain
19	chr9:103260400-103264800	Weak transcription	Brain Hippocampus Middle	brain
20	chr9:103260400-103272200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr9:103260400-103272200	Weak transcription	Brain Substantia Nigra	brain
22	chr9:103260800-103262800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:103260800-103287200	Weak transcription	Brain Cingulate Gyrus	brain
24	chr9:103261000-103262800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr9:103261000-103263800	Weak transcription	Brain Angular Gyrus	brain
26	chr9:103261000-103265600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:103261000-103272400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr9:103261200-103264000	Strong transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:103261200-103267200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr9:103261200-103287600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr9:103261600-103263000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr9:103261600-103340200	Weak transcription	Left Ventricle	heart

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