Variant report

Variant	rs10993362
Chromosome Location	chr9:97590535-97590536
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97580692..97583696-chr9:97588466..97591730,4	MCF-7	breast:
2	chr9:97590052..97592321-chr9:97623121..97624727,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1028843	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10512234	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10512236	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993325	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10993329	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993337	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993340	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993341	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993349	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10993350	0.81[EUR][1000 genomes]
rs10993360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993363	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993364	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12336061	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12336308	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12336437	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12337706	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12337992	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12338982	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12341764	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12341814	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12343530	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12344157	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12344256	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12345098	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12345321	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12345763	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12345783	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12346548	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12347744	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12348060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12348206	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12351111	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352600	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352856	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16911670	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16911713	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2025793	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34335636	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3808890	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs41281168	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60048957	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60514919	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61446634	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7866487	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs925813	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9987493	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9987549	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9987803	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97563600-97594400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr9:97567400-97593400	Weak transcription	Thymus	Thymus
3	chr9:97570000-97594400	Weak transcription	Dnd41	blood
4	chr9:97570000-97601400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
6	chr9:97572000-97601600	Weak transcription	Primary T cells fromperipheralblood	blood
7	chr9:97572600-97593600	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr9:97580400-97590600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr9:97580600-97600200	Weak transcription	Primary hematopoietic stem cells	blood
10	chr9:97581800-97591800	Weak transcription	Small Intestine	intestine
11	chr9:97581800-97609600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr9:97582000-97599400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr9:97582200-97594000	Weak transcription	NHEK	skin
14	chr9:97584200-97593800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:97584800-97591600	Weak transcription	GM12878-XiMat	blood
16	chr9:97585000-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr9:97586000-97591600	Weak transcription	Hela-S3	cervix
18	chr9:97587400-97590600	Enhancers	Ovary	ovary
19	chr9:97587800-97590600	Enhancers	Adipose Nuclei	Adipose
20	chr9:97588000-97590800	Enhancers	NHDF-Ad	bronchial
21	chr9:97588000-97591600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:97588000-97591600	Weak transcription	Fetal Stomach	stomach
23	chr9:97588600-97590600	Enhancers	Colon Smooth Muscle	Colon
24	chr9:97588600-97590800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:97588800-97590600	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr9:97588800-97590600	Enhancers	Brain Substantia Nigra	brain
27	chr9:97588800-97591600	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr9:97589000-97591000	Enhancers	Liver	Liver
29	chr9:97589000-97591000	Enhancers	Osteobl	bone
30	chr9:97589200-97590600	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr9:97589200-97590600	Enhancers	NHLF	lung
32	chr9:97589200-97591000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:97589200-97591000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr9:97589200-97591000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:97589200-97591000	Enhancers	Fetal Lung	lung
36	chr9:97589200-97591800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr9:97589200-97591800	Weak transcription	Fetal Muscle Trunk	muscle
38	chr9:97589200-97591800	Weak transcription	Left Ventricle	heart
39	chr9:97589200-97592400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr9:97589200-97598800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:97589200-97600400	Weak transcription	Primary T cells from cord blood	blood
42	chr9:97589200-97602000	Weak transcription	Lung	lung
43	chr9:97589200-97605400	Weak transcription	Spleen	Spleen
44	chr9:97589200-97609400	Weak transcription	Pancreas	Pancrea
45	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
46	chr9:97589400-97590600	Enhancers	Muscle Satellite Cultured Cells	--
47	chr9:97589400-97590600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr9:97589400-97590600	Flanking Active TSS	A549	lung
49	chr9:97589400-97591000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:97589400-97591200	Weak transcription	Esophagus	oesophagus

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