Variant report

Variant	rs12341764
Chromosome Location	chr9:97526526-97526527
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:97525737..97528052-chr9:97529535..97531764,2	K562	blood:
2	chr9:97525840..97529015-chr9:97532404..97535563,3	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10122127	1.00[JPT][hapmap]
rs1028843	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10512234	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512236	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10732405	1.00[JPT][hapmap]
rs10993325	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993329	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993340	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993349	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993351	1.00[JPT][hapmap]
rs10993360	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993362	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993363	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10993364	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12336061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336308	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336437	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338982	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341814	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12344256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12345098	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12345321	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345763	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345783	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12346548	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347744	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12348060	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12348206	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12351111	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12352600	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12352856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911670	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911713	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304884	1.00[JPT][hapmap]
rs242259	1.00[JPT][hapmap]
rs34335636	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356135	1.00[JPT][hapmap]
rs376902	1.00[JPT][hapmap]
rs3808890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858088	1.00[JPT][hapmap]
rs41281168	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744380	1.00[JPT][hapmap]
rs60048957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60514919	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61446634	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479566	0.85[AFR][1000 genomes]
rs7031172	1.00[JPT][hapmap]
rs7045387	1.00[JPT][hapmap]
rs7866487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7869666	1.00[JPT][hapmap]
rs925813	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9987493	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9987549	0.89[AMR][1000 genomes]
rs9987803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97506200-97533400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:97509200-97536000	Weak transcription	Pancreas	Pancrea
3	chr9:97512600-97530400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr9:97512600-97540800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr9:97512600-97544600	Weak transcription	Psoas Muscle	Psoas
6	chr9:97519800-97531200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:97519800-97544600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:97520400-97531800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:97520600-97529600	Weak transcription	NH-A	brain
10	chr9:97520600-97530600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:97520800-97531200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr9:97521400-97527400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr9:97521800-97541200	Weak transcription	Right Ventricle	heart
14	chr9:97522400-97540400	Weak transcription	Fetal Heart	heart
15	chr9:97522800-97532600	Weak transcription	K562	blood
16	chr9:97522800-97534600	Weak transcription	Fetal Brain Male	brain
17	chr9:97522800-97534600	Weak transcription	NHLF	lung
18	chr9:97523000-97529000	Weak transcription	NHDF-Ad	bronchial
19	chr9:97523000-97530200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr9:97523000-97534600	Weak transcription	Ovary	ovary
21	chr9:97523200-97529800	Weak transcription	GM12878-XiMat	blood
22	chr9:97523200-97532600	Weak transcription	Brain Hippocampus Middle	brain
23	chr9:97523200-97535000	Weak transcription	Colon Smooth Muscle	Colon
24	chr9:97523400-97528600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:97523400-97529000	Weak transcription	Brain Angular Gyrus	brain
26	chr9:97523400-97529600	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr9:97523400-97529600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:97523400-97529600	Weak transcription	Primary B cells from cord blood	blood
29	chr9:97523400-97529800	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr9:97523400-97530000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr9:97523400-97530400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:97523400-97530800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr9:97523400-97530800	Weak transcription	Brain Cingulate Gyrus	brain
34	chr9:97523400-97531200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:97523400-97532000	Weak transcription	Adipose Nuclei	Adipose
36	chr9:97523400-97532000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr9:97523400-97532000	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr9:97523400-97533000	Weak transcription	Brain Inferior Temporal Lobe	brain
39	chr9:97523400-97533400	Weak transcription	Brain Substantia Nigra	brain
40	chr9:97523400-97533600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:97523400-97534400	Weak transcription	Osteobl	bone
42	chr9:97523400-97534600	Weak transcription	Right Atrium	heart
43	chr9:97523400-97535600	Weak transcription	Aorta	Aorta
44	chr9:97523400-97535800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr9:97523400-97541400	Weak transcription	NHEK	skin
46	chr9:97523400-97544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr9:97523400-97544400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr9:97523400-97545200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr9:97523400-97545200	Weak transcription	Liver	Liver
50	chr9:97523400-97545200	Weak transcription	Lung	lung

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