Variant report

Variant	rs61446634
Chromosome Location	chr9:97593983-97593984
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs1028843	0.86[EUR][1000 genomes]
rs10512234	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10512236	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993325	0.86[EUR][1000 genomes]
rs10993329	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10993337	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993340	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993341	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10993349	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993350	0.81[EUR][1000 genomes]
rs10993360	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10993362	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10993363	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993364	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12336061	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12336308	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12336437	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12337706	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12337992	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12338982	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12341764	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12341814	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12343530	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12344157	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12344256	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12345098	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12345321	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12345763	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12345783	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12346548	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12347744	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12348060	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12348206	0.86[EUR][1000 genomes]
rs12351111	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12352600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12352856	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16911670	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16911713	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2025793	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34335636	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3808890	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs41281168	0.86[EUR][1000 genomes]
rs60048957	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60514919	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7866487	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs925813	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9987493	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9987549	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9987803	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	esv3344137	chr9:97590602-97594805	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97563600-97594400	Weak transcription	Primary T helper cells PMA-I stimulated	--
2	chr9:97570000-97594400	Weak transcription	Dnd41	blood
3	chr9:97570000-97601400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr9:97571800-97622600	Weak transcription	Primary B cells from cord blood	blood
5	chr9:97572000-97601600	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr9:97580600-97600200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr9:97581800-97609600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr9:97582000-97599400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:97582200-97594000	Weak transcription	NHEK	skin
10	chr9:97585000-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:97589200-97598800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:97589200-97600400	Weak transcription	Primary T cells from cord blood	blood
13	chr9:97589200-97602000	Weak transcription	Lung	lung
14	chr9:97589200-97605400	Weak transcription	Spleen	Spleen
15	chr9:97589200-97609400	Weak transcription	Pancreas	Pancrea
16	chr9:97589200-97622400	Weak transcription	Aorta	Aorta
17	chr9:97589400-97598600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr9:97590000-97596600	Weak transcription	Fetal Heart	heart
19	chr9:97590200-97596800	Weak transcription	Fetal Intestine Small	intestine
20	chr9:97590400-97598600	Weak transcription	Fetal Intestine Large	intestine
21	chr9:97590400-97602000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:97590600-97609600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr9:97590600-97616000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr9:97591000-97595800	Weak transcription	Liver	Liver
25	chr9:97591000-97609200	Weak transcription	Osteobl	bone
26	chr9:97592000-97597000	Weak transcription	HepG2	liver
27	chr9:97592200-97594600	Weak transcription	Hela-S3	cervix
28	chr9:97592200-97594600	Weak transcription	HSMM	muscle
29	chr9:97592200-97599800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:97592200-97608400	Weak transcription	HSMMtube	muscle
31	chr9:97592200-97609400	Weak transcription	NHDF-Ad	bronchial
32	chr9:97592600-97599200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr9:97592800-97594200	Weak transcription	GM12878-XiMat	blood
34	chr9:97593200-97594800	ZNF genes & repeats	A549	lung

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