Variant report

Variant	rs16911670
Chromosome Location	chr9:97505810-97505811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10122127	1.00[JPT][hapmap]
rs1028843	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10512234	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512236	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10732405	1.00[JPT][hapmap]
rs10993325	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10993329	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993337	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993340	1.00[CEU][hapmap];0.91[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993341	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993349	1.00[CEU][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10993350	0.81[EUR][1000 genomes]
rs10993351	1.00[JPT][hapmap]
rs10993360	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993362	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10993363	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10993364	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12336061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336308	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12336437	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337706	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12337992	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12338982	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341764	1.00[CEU][hapmap];1.00[JPT][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12341814	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12343530	1.00[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344157	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12344256	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12345098	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12345321	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345763	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12345783	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12346548	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12347744	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12348060	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12348206	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12351111	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12352600	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12352856	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16911713	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2025793	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2304884	1.00[JPT][hapmap]
rs242259	1.00[JPT][hapmap]
rs34335636	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs356135	1.00[JPT][hapmap]
rs376902	1.00[JPT][hapmap]
rs3808890	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3858088	1.00[JPT][hapmap]
rs41281168	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4744380	1.00[JPT][hapmap]
rs60048957	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60514919	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61446634	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6479566	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7031172	1.00[JPT][hapmap]
rs7045387	1.00[JPT][hapmap]
rs7866487	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7869666	1.00[JPT][hapmap]
rs925813	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9987493	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9987549	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9987803	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893596	chr9:97321172-97598966	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041922	chr9:97444976-97536753	Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97489600-97506000	Weak transcription	Lung	lung
2	chr9:97489600-97524800	Weak transcription	Esophagus	oesophagus
3	chr9:97489800-97508000	Weak transcription	Primary B cells from peripheral blood	blood
4	chr9:97489800-97511000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:97489800-97511400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:97489800-97511600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr9:97489800-97521600	Weak transcription	Fetal Thymus	thymus
8	chr9:97489800-97522000	Weak transcription	Thymus	Thymus
9	chr9:97489800-97522400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:97490000-97510600	Weak transcription	Primary T cells from cord blood	blood
11	chr9:97490000-97510800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:97490000-97510800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr9:97490000-97510800	Weak transcription	Fetal Brain Female	brain
14	chr9:97490000-97510800	Weak transcription	NHDF-Ad	bronchial
15	chr9:97490000-97511600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr9:97490000-97511600	Weak transcription	Osteobl	bone
17	chr9:97490000-97512200	Weak transcription	Colon Smooth Muscle	Colon
18	chr9:97490000-97519400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr9:97490000-97521600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr9:97490200-97508800	Weak transcription	Fetal Muscle Leg	muscle
21	chr9:97490200-97510800	Weak transcription	GM12878-XiMat	blood
22	chr9:97490200-97511000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:97490200-97511000	Weak transcription	NHEK	skin
24	chr9:97490200-97512200	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:97490200-97519200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:97490400-97508800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:97490400-97508800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr9:97490400-97511400	Weak transcription	Hela-S3	cervix
29	chr9:97490400-97511600	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr9:97490600-97510800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr9:97491000-97511000	Weak transcription	Dnd41	blood
32	chr9:97491400-97507800	Weak transcription	Brain Germinal Matrix	brain
33	chr9:97496400-97511000	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr9:97496800-97511600	Weak transcription	Left Ventricle	heart
35	chr9:97497000-97510000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:97497000-97510800	Weak transcription	Primary hematopoietic stem cells	blood
37	chr9:97497000-97511400	Weak transcription	Adipose Nuclei	Adipose
38	chr9:97497000-97511600	Weak transcription	Psoas Muscle	Psoas
39	chr9:97497000-97522000	Weak transcription	Placenta	Placenta
40	chr9:97497200-97522200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr9:97497600-97511400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr9:97499400-97508800	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr9:97499400-97511600	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr9:97499600-97508000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr9:97500200-97508400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr9:97502800-97518800	Weak transcription	K562	blood
47	chr9:97503000-97509200	Weak transcription	Brain Anterior Caudate	brain
48	chr9:97503000-97511000	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr9:97503000-97511400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr9:97503000-97511400	Weak transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links