Variant report

Variant	rs10993560
Chromosome Location	chr9:93263562-93263563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:93263372..93266232-chr9:93320840..93322569,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10121938	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10123097	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10512200	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10993555	0.88[AMR][1000 genomes]
rs10993558	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993559	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10993561	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993562	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993571	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12338796	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12339278	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12339449	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12339490	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12340368	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12343716	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12349410	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12350452	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12351665	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12352999	0.86[AMR][1000 genomes]
rs12353086	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs13440327	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17450776	0.83[AMR][1000 genomes]
rs17451922	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7021025	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7025381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7033803	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7033909	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes]
rs7036767	0.88[EUR][1000 genomes]
rs7042807	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs919105	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs970686	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041278	chr9:92965701-93560454	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv482748	chr9:93123377-93279526	Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv893565	chr9:93130796-93392332	Genic enhancers Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv614853	chr9:93183404-93266508	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv614854	chr9:93209923-93266508	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv893566	chr9:93209923-93439259	Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93263000-93263600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:93263000-93264800	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:93263200-93265000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr9:93263200-93265000	Enhancers	HUES64 Cell Line	embryonic stem cell

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